1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gactttcttcttccatgaaatttcgtatttcttttattaaagcttaatatgtaagcttctcattagcattatttttctctattgcatgatccatcatcagGTCATTAGAGCCTCCACTATTGGGTACTGGACTAAAGATGAAGATTCATTGACAAGAGCAATTGTGACTCGGGCTGAAATTGATATGACGAAGATCAAAG
species | Vitis vinifera |
transcript | Vv00s0131g00010.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
aatatgtaagcttctcattagcattatttttctctattgcatgatccatcatcagGTCATTAGAGCCTCCACTATTGGGTACTGGACTAAAGATGAAGATTCATTGACAAGAGCAATTGTGACTCGGGCTGAAATTGATATGACGAAGATCAAAG
gcttaat putative branch site (score: 4)
attatttttctctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactttcttcttccatgaaatttcgtatttcttttattaaagcttaatatgtaagcttctcattagcattatttttctctattgcatgatccatcatcagGTCATTAGAGCCTCCACTATTGGGTACTGGACTAAAGATGAAGATTCATTGACAAGAGCAATTGTGACTCGGGCTGAAATTGATATGACGAAGATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat