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...aacggatataaacctctagtcttttcgtcacattagcttgcaagaaatccttgaatcatttttgtgctttttttttttttttttctcatttttgttgcagGCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTGGCTCAGTACATGTAATTTGTTCCCCAAGGAAATGCAGCTATTTCAAATC
species | Vitis vinifera |
transcript | Vv04s0008g04520.t01 |
intron # | 38 |
splice site | 3' |
intron type | U2 |
EST: TTGCCTCTCGAAGTGGAAGTGTGGCTGATGTTCAATATGTAGCGCATCAG GCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTGEST: gi|349809889|gb|FQ398514.1|FQ398514
genomic: TTGCCTCTCGAAGTGGAAGTGTGGCTGATGTTCAATATGTAGCGCATCAGgttcttcatc ... tttgttgcagGCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTG
EST: TTGCCTCTCGAAGTGGAAGTGTGGCTGATGTTCAATATTTAGCGCATCAG GCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTGEST: gi|349807218|gb|FQ401210.1|FQ401210
genomic: TTGCCTCTCGAAGTGGAAGTGTGGCTGATGTTCAATATGTAGCGCATCAGgttcttcatc ... tttgttgcagGCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTG
EST: TTGCCTCTCGAAGTGGAAGTGTGGCTGATGTTCAATATTTAGCGCATCAG GCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTG
genomic: TTGCCTCTCGAAGTGGAAGTGTGGCTGATGTTCAATATGTAGCGCATCAGgttcttcatc ... tttgttgcagGCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTG
aatccttgaatcatttttgtgctttttttttttttttttctcatttttgttgcagGCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTGGCTCAGTACATGTAATTTGTTCCCCAAGGAAATGCAGCTATTTCAAATC
tcatttttgtgctttt CT-rich tract
atttttgtgctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacggatataaacctctagtcttttcgtcacattagcttgcaagaaatccttgaatcatttttgtgctttttttttttttttttctcatttttgttgcagGCATTGCATGCAAATGCACTACCCGTGCTCGACATGTGCAAACAATGGTTGGCTCAGTACATGTAATTTGTTCCCCAAGGAAATGCAGCTATTTCAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - -ataaacc
- - - - - - - - - - - - - - - - - -gcttgca
- - - - - - - - - - - - - - - - - - - - - agaaatc