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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagttcactttgttttagtatcattatccataatgcaattaagctatcacttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAACTCTTTGCTCTGAAGAGAGTTAGTTTTGCTGACCGCTTAGTCACCCACA

Basic information

species Vitis vinifera
transcript Vv17s0000g07230.t01
intron # 33
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30323322|gb|CD006584.1|CD006584
EST:     TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|27581527|gb|CB004222.1|CB004222
EST:     TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|87586738|gb|DY474892.1|DY474892
EST:     TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|27579766|gb|CB002461.1|CB002461
EST:     TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|27581266|gb|CB003961.1|CB003961
EST:     TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|110360462|gb|EC923582.1|EC923582
EST:     TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|30323293|gb|CD006555.1|CD006555
EST:     TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|27755234|gb|CB035989.1|CB035989
EST:     ATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: ATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|110689535|gb|EE065843.1|EE065843
EST:     TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: gi|30322055|gb|CD005317.1|CD005317
EST:     TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG                         GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttgttttagtatcattatccataatgcaattaagctatcacttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAACTCTTTGCTCTGAAGAGAGTTAGTTTTGCTGACCGCTTAGTCACCCACA
                                         tcacttcttt  CT-rich tract
       ttttagtatcattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaagttcactttgttttagtatcattatccataatgcaattaagctatcacttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAACTCTTTGCTCTGAAGAGAGTTAGTTTTGCTGACCGCTTAGTCACCCACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA