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...ttagcttttctgtcaaatggattgtgcttccgttttcttgccttacagttgggcatgtccactagtttctgtctgagcattttgttcatcattttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGGACGCTAATGGTGGAAAGTCTCCCACTCTGAATATTAGATTGGAAAGAA
species | Vitis vinifera |
transcript | Vv17s0000g07230.t01 |
intron # | 32 |
splice site | 3' |
intron type | U2 |
EST: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAG GATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGEST: gi|27581527|gb|CB004222.1|CB004222
genomic: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAGgtttggattg ... attttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAG
EST: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAG GATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGEST: gi|27579766|gb|CB002461.1|CB002461
genomic: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAGgtttggattg ... attttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAG
EST: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAG GATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGEST: gi|27581266|gb|CB003961.1|CB003961
genomic: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAGgtttggattg ... attttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAG
EST: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAG GATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGEST: gi|110360462|gb|EC923582.1|EC923582
genomic: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAGgtttggattg ... attttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAG
EST: CTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAG GATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGEST: gi|30323293|gb|CD006555.1|CD006555
genomic: CTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAGgtttggattg ... attttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAG
EST: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAG GATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGEST: gi|30322055|gb|CD005317.1|CD005317
genomic: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAGgtttggattg ... attttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAG
EST: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAG GATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAG
genomic: CAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAGgtttggattg ... attttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAG
cagttgggcatgtccactagtttctgtctgagcattttgttcatcattttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGGACGCTAATGGTGGAAAGTCTCCCACTCTGAATATTAGATTGGAAAGAA
ttcatcattttctc CT-rich tract
attttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagcttttctgtcaaatggattgtgcttccgttttcttgccttacagttgggcatgtccactagtttctgtctgagcattttgttcatcattttctcagGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGGACGCTAATGGTGGAAAGTCTCCCACTCTGAATATTAGATTGGAAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - -ctgtcaa
- - - - - - - - -tggattg
- - - - - - - - - - - - tgcttcc
- - - - - - - - - - - - - - - - - - cttgcct
- - - - - - - - - - - - - - - - - - - - - - -cagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtc