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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatgagattatattgattttttttttaattgattttgttatatagtttctattgtaggcatttgattggtaaactgcaccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTCGTCCTTTTAGACTTTCATCAACAAAGGGGCTTCTTCTT

Basic information

species Vitis vinifera
transcript Vv17s0000g02140.t01
intron # 32
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349820359|gb|FQ403975.1|FQ403975
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349819138|gb|FQ412032.1|FQ412032
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349824597|gb|FQ413264.1|FQ413264
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|71860468|gb|DT009523.1|DT009523
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|71887135|gb|DT036190.1|DT036190
EST:     CCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: CCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30253243|gb|CB970794.1|CB970794
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349817092|gb|FQ399839.1|FQ399839
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349808649|gb|FQ405793.1|FQ405793
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30323090|gb|CD006352.1|CD006352
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|32247669|gb|CD713488.1|CD713488
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349826605|gb|FQ418696.1|FQ418696
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349824745|gb|FQ414603.1|FQ414603
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30326313|gb|CD009575.1|CD009575
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30130704|gb|CB916043.1|CB916043
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30324336|gb|CD007598.1|CD007598
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|26257761|gb|CA808824.1|CA808824
EST:     ACTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGACGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|37190358|gb|CF609707.1|CF609707
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|32268416|gb|CD717575.1|CD717575
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349820676|gb|FQ408505.1|FQ408505
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349808888|gb|FQ406738.1|FQ406738
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttatatagtttctattgtaggcatttgattggtaaactgcaccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTCGTCCTTTTAGACTTTCATCAACAAAGGGGCTTCTTCTT
                          atttgat  putative branch site (score: 5)
                                           cacctttttt  putative PPT
     tatatagtttctatt  TA-rich tract