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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaagtccttgtttgtcttttcaaggctttcttgttttttatatgcttggtacttaacattgccagttctaattttcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGTTGGAAATTATGGATGGTTTCTTTGGCAATTGGCCTTGTCAG

Basic information

species Vitis vinifera
transcript Vv09s0018g02130.t01
intron # 32
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 32
lower sequence: LOC_Os02g08010.1 (Oryza sativa), 3'ss of exon 14
---------gtgagaagtccttgtttgtcttttcaaggctttcttgttttttatatgcttggtacttaacattgccagttctaattttcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGTTGGAAATTATGGATGGTTTCTTTGGCAATTGGCCTTGTCAG
         |   ||| | ||   |   | ||  || |||   |   |  ||    |    |   | ||  ||  |     ||  | |  |    || | || ||||||||||||||||| || ||||||||||| || | ||||||||||||  | ||| | |||||| | |  |||||  |||| ||
gtatgaaagggtggaaatactcaatccaccttcaaatgctgattaaatagttcggggagcaga--taaaatttaactaacatatctctgatactcagGTAATAATCATTGAGTTTCTTGGGAAATTTACATCAACTGTGAGACTCAGTTGGAAGCTTTGGCTTGTTTCTGTTGGTATTGGTTTTGTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110357641|gb|EC921275.1|EC921275
EST:     CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAG                         ATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
genomic: CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGgtgagaagtc ... tcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
EST: gi|110357398|gb|EC920911.1|EC920911
EST:     CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAG                         ATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
genomic: CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGgtgagaagtc ... tcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
EST: gi|110418515|gb|EC984675.1|EC984675
EST:     AAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAG                         ATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
genomic: AAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGgtgagaagtc ... tcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
EST: gi|110392228|gb|EC957499.1|EC957499
EST:     CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAG                         ATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
genomic: CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGgtgagaagtc ... tcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
EST: gi|110364160|gb|EC923438.1|EC923438
EST:     CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAG                         ATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
genomic: CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGgtgagaagtc ... tcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
EST: gi|110379425|gb|EC944618.1|EC944618
EST:     CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAG                         ATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
genomic: CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGgtgagaagtc ... tcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
EST: gi|110358395|gb|EC922574.1|EC922574
EST:     CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAG                         ATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT
genomic: CTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGgtgagaagtc ... tcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttttttatatgcttggtacttaacattgccagttctaattttcttttgtagATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGTTGGAAATTATGGATGGTTTCTTTGGCAATTGGCCTTGTCAG
                                    ttctaat  putative branch site (score: 2)
                                    ttctaattttctttt  CT-rich tract
                                    ttctaattttctttt  TA-rich tract