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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtctggggtaagctgagtaaaacaggaatgagtcgttaaaaaataaataaaaatgtcatgacctaagtttttctttttccaggtcacattataaaattaattttgaataattacttatgtttgttttttactatttcaaagtaccaaacaaaaattagccaaccatttcatttgcagATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACTGGAGTGACTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTG

Basic information

species Vitis vinifera
transcript Vv09s0018g02130.t01
intron # 31
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 31
lower sequence: GLYMA15G00340.1 (Glycine max), 3'ss of exon 31
gtaagtagtctggggtaagctgagtaaaacaggaatgagtcgttaaaaaataaataaaaatgtcatgacctaagtttttctttttccaggtcacattataaaattaattttgaataattacttatgtttgttttttactatttcaaagtaccaaacaaaaattagccaaccatttcatttgcagATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACTGGAGTGACTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTG
                                                                                                                  ||| |    ||  | || |||  ||  || |  |    ||||      ||  |||    ||   || |||||||||||||||||||||||  |||| ||||| || || ||||||||    ||||||||||| ||    || || ||||| ||  ||||||| ||||| |
-----------------------------------------------------------------------------------------------------------------gtaagtgag-atagtagtatttggctggttgatggattgaaaccctctataatcaattgatt---ttacagATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTCTTCCGGGGAGTGACTAAGAACGGTCTCTTCATGGGAATTGTTGGAATGACCTTCG

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 31
lower sequence: GLYMA13G44990.1 (Glycine max), 3'ss of exon 31
gtaagtagtctggggtaagctgagtaaaacaggaatgagtcgttaaaaaataaataaaaatgtcatgacctaagtttttctttttccaggtcacattataaaattaattttgaataattacttatgtttgttttttactatttcaaagtaccaaacaaaaattagccaaccatttcatttgcagATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACTGGAGTGACTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTG
                                                                       |  |||   ||  |  |    ||        |||||||  | ||  ||| | | | | |  ||||| ||| | | | ||       |  ||||  |||    ||   || |||||||||||||||||||||||  |||| ||||| || || ||||||||    ||||||||||| ||    || || ||||| ||  ||||||| ||||| |
-----------------------------------------------------------------------atatttgggttgatggattgtacccctctttattaatt--ggattcttattgaagatcgagtttta-tatataataata-------atgattattcaattgatt---ttacagATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTCTTCCGGGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAATGACCTTCG

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 31
lower sequence: AT3G21180.1 (Arabidopsis thaliana), 3'ss of exon 29
gtaagtagtctggggtaagctgagtaaaacaggaatgagtcgttaaaaaataaataaaaatgtcatgacctaagtttttctttttccaggtcacattataaaattaattttgaataattacttatgtttgttttttactatttcaaagtaccaaacaaaaattagccaaccatttcatttgcagATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACTGGAGTGACTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTG
                                                                                                        |||     ||| ||  ||| | |    | | || | ||  ||  ||   |       |||  |   ||  ||  || |||||||||||||||||||| || ||||| || |||||||| ||||| ||    ||||| | ||| ||    || ||  | |  ||  ||||| |||| ||| 
-------------------------------------------------------------------------------------------------------gtaagc--aaatcatctcttctttcatctatatagtcttaaaagatatggagttgtttttaatcttgcaagtc--ttccagATATTCAACGAGTTCAACGCAAGAAAACCTGATGAAATGAATGTATTCCGGGGAGTAAATAAGAACCCTCTCTTCGTAGCAATTGTTGGAGTCACTTTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110357641|gb|EC921275.1|EC921275
EST:     CAACTCAAGTGAAGAATAGTATGATATTCAACTCATTTGTCCTATGCCAA                         ATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACT
genomic: CAACTCAAGTGAAGAATAGTATGATATTCAACTCATTTGTCCTATGCCAAgtaagtagtc ... tcatttgcagATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACT
EST: gi|110357398|gb|EC920911.1|EC920911
EST:     CAACTCAAGTGAAGAATAGTATGATATTCAACTCATTTGTCCTATGCCAA                         ATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACT
genomic: CAACTCAAGTGAAGAATAGTATGATATTCAACTCATTTGTCCTATGCCAAgtaagtagtc ... tcatttgcagATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACT
EST: gi|110358395|gb|EC922574.1|EC922574
EST:     CAACTCAAGTGAAGAATAGTATGATATTCAACTCATTTGTCCTATGCCAA                         ATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACT
genomic: CAACTCAAGTGAAGAATAGTATGATATTCAACTCATTTGTCCTATGCCAAgtaagtagtc ... tcatttgcagATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttactatttcaaagtaccaaacaaaaattagccaaccatttcatttgcagATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACTGGAGTGACTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTG
                                           tttcattt  CT-rich tract
                       aaacaaaaatta  TA-rich tract