1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
...aatctacctttacattctatagcagaatctgttgttttcattcagattattgctatgttgtattcctccaacaattgcttctggtttgatgctttgacagATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACACAGAATCAAGAAGGAAAAATATAGAAGCTAAGCCGAGCCTAAAGCAAATG
species | Vitis vinifera |
transcript | Vv02s0025g03560.t01 |
intron # | 31 |
splice site | 3' |
intron type | U2 |
EST: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAG ATCAACTGGCCCTAAATATGGAGAACCTCAGACACCCTCTGCACCACACACEST: gi|56409020|gb|CX017272.1|CX017272
genomic: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAGgtaagagtgg ... gctttgacagATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACAC
EST: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAG ATCAACTGGCCCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACACEST: gi|110398103|gb|EC964221.1|EC964221
genomic: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAGgtaagagtgg ... gctttgacagATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACAC
EST: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAG ATCAACTGGCCCTAAATATGGAGAACCTCAGACACCCTCEST: gi|351018473|gb|FQ439285.1|FQ439285
genomic: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAGgtaagagtgg ... gctttgacagATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTC
EST: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAG ATCAACTGGCCCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACACEST: gi|110417145|gb|EC983174.1|EC983174
genomic: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAGgtaagagtgg ... gctttgacagATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACAC
EST: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAG ATCAACTGGCCCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACAC
genomic: AAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAGgtaagagtgg ... gctttgacagATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACAC
attattgctatgttgtattcctccaacaattgcttctggtttgatgctttgacagATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACACAGAATCAAGAAGGAAAAATATAGAAGCTAAGCCGAGCCTAAAGCAAATG
gtttgat putative branch site (score: 5)
ttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctacctttacattctatagcagaatctgttgttttcattcagattattgctatgttgtattcctccaacaattgcttctggtttgatgctttgacagATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACACAGAATCAAGAAGGAAAAATATAGAAGCTAAGCCGAGCCTAAAGCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - -gctatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct