1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' |
...ataaagcagatgaagaaaatagtacaactacatagttttaggaaatgaaagcttcttcttccccttcttcttcaaatgactagcttttccttcttgacagCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGAAATTGTTAGGCGGATAACTACAAGACCTCGATATATCCTTGCAAAG
species | Vitis vinifera |
transcript | Vv17s0000g02140.t01 |
intron # | 30 |
splice site | 3' |
intron type | U2 |
EST: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAAT CTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGEST: gi|30253243|gb|CB970794.1|CB970794
genomic: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAATgttagtgttc ... ttcttgacagCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGG
EST: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAAT CTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGEST: gi|37190316|gb|CF609665.1|CF609665
genomic: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAATgttagtgttc ... ttcttgacagCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGG
EST: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAAT CTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGEST: gi|26257761|gb|CA808824.1|CA808824
genomic: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAATgttagtgttc ... ttcttgacagCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGG
EST: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAAT CTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGEST: gi|37190358|gb|CF609707.1|CF609707
genomic: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAATgttagtgttc ... ttcttgacagCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGG
EST: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAAT CTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGG
genomic: TTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAATgttagtgttc ... ttcttgacagCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGG
tgaaagcttcttcttccccttcttcttcaaatgactagcttttccttcttgacagCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGAAATTGTTAGGCGGATAACTACAAGACCTCGATATATCCTTGCAAAG
ctagcttttccttctt CT-rich tract
ttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaagcagatgaagaaaatagtacaactacatagttttaggaaatgaaagcttcttcttccccttcttcttcaaatgactagcttttccttcttgacagCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGAAATTGTTAGGCGGATAACTACAAGACCTCGATATATCCTTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- -aagcaga
- - - - - - aagaaaa
- - - - - - - - - - - - caactac
- - - - - - - - - - - - - - - - - - - - - aaatgaa