Sequence
atgc intronic sequence ATGC exonic sequence...gtttggtgattttctgttcagttagttcacggatctaccaattttttttttatagcatattattactgaaggtatggttactctttctgtgttatttcagGTTTCATGTGGTTTATTCTTACATTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTTATTGTGGTGTTCACGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os10g17990.1 (Oryza sativa), 3'ss of exon 4
-gtttggtgattttctgttcagttagttcacggatctaccaattttttttttatagcatattattactgaa--ggtatggttactctttctgtgttatttcagGTTTCATGTGGTTTATTCTTACATTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTTATTGTGGTGTTCACGCA
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cataaacttattgatatatagatgagtccattgcaccattgataaaattttaactacgtgctgccaatatatcaatttggttattacttctgtcata---cagGGTTTGTATGGTTTATTCTCACTCTAAAGAAAAAGGCGTACAAGTATCAATTCAGTCAATATGCATGGACTCACATGATCCTATTGATGGTATTTGCACA
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G02210.1 (Glycine max), 3'ss of exon 2
--gtttggtg--attttctgttcagttagttcacggatctaccaattttt-tttttatagcatattattactgaaggtatggttactctttctgtgttatttcagGTTTCATGTGGTTTATTCTTACATTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTTATTGTGGTGTTCACGCA
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taacttaattttatctaatatcctgttaacctagtcttcagcaggttcaagtgtttgcagcctgtaatt--ttaaaaaaaaatctttcattct---tgatttcagGTTTTGTATGGTTTATTCTTTCATTGAAGAAGAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCA
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G46440.1 (Glycine max), 3'ss of exon 4
--gtttggtgattttctgttcagttagttcacggatctaccaattttttttttatagcatattattactgaaggtatggttactctttctgtgttatttcagGTTTCATGTGGTTTATTCTTACATTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTTATTGTGGTGTTCACGCA
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tatcctattaacctagtcttctgggggttcaagtgtttgttgcctgtaatttaaaaaaaaaaaatcattcccgaataagtcatttcatctgtg--atttcagGTTTTGTATGGTTTATTCTTTCATTGAAGAAGAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110424073|gb|EC990426.1|EC990426EST: CGGCCTTCTCAAGTATCAGATGGTTATTTGTTATTTCTTATATATTGCAG GTTTCATGTGGTTTATTCTTACATTAAAGAAGAAGATGTACAAGTATCAAT
genomic: CGGCCTTCTCAAGTATCAGATGGTTATTTGTTATTTCTTATATATTGCAGgtttgttcac ... gttatttcagGTTTCATGTGGTTTATTCTTACATTAAAGAAGAAGATGTACAAGTATCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttatagcatattattactgaaggtatggttactctttctgtgttatttcagGTTTCATGTGGTTTATTCTTACATTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTTATTGTGGTGTTCACGCA
ttatttc CT-rich tract
tatagcatattatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttggtgattttctgttcagttagttcacggatctaccaattttttttttatagcatattattactgaaggtatggttactctttctgtgttatttcagGTTTCATGTGGTTTATTCTTACATTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTTATTGTGGTGTTCACGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -tggtgat
- - - - - - - - - - - - - - - - - ctaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctg