1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttcacaatctaccattcatttaaatatgcgctaaaagttctaagatttgtcatgtgacttggaagtgtgcttatgatttatggttattttttatttcagGTTTTTAGAAAGTTTGGCATGGAAAAGTTTGATCCAACAAATGAACAATTTGATCCACATAGACATAATGCAGCATTCCAAATCCCAGATCCTTCTAAGC
species | Vitis vinifera |
transcript | Vv19s0090g01190.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAAAACACTTCTGGAGGGTGTTGAAATGACTGAAAAACAGCTTGGAGAG NTTTTTTAGAAA-TTCGGCATGGAAAAGTEST: gi|122689930|gb|EC946575.1|EC946575
genomic: TAAAAACACTTCTGGAGGGTGTTGAAATGACTGAAAAACAGCTTGGAGAGgtaaactcat ... tttatttcagGTTTTT-AGAAAGTTTGGCATGGAAAAGT
EST: TAAAAACACTTCTGGAGGGTGTTGAAATGACTGAAAAACAGCTTGGAGAG GTTTTTAGAAAGTTTGGCATGGAAAAGTTTGATCCAACAAATGAACAATTT
genomic: TAAAAACACTTCTGGAGGGTGTTGAAATGACTGAAAAACAGCTTGGAGAGgtaaactcat ... tttatttcagGTTTTTAGAAAGTTTGGCATGGAAAAGTTTGATCCAACAAATGAACAATTT
atttgtcatgtgacttggaagtgtgcttatgatttatggttattttttatttcagGTTTTTAGAAAGTTTGGCATGGAAAAGTTTGATCCAACAAATGAACAATTTGATCCACATAGACATAATGCAGCATTCCAAATCCCAGATCCTTCTAAGC
ttattttttatttc CT-rich tract
ttatgatttatggtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcacaatctaccattcatttaaatatgcgctaaaagttctaagatttgtcatgtgacttggaagtgtgcttatgatttatggttattttttatttcagGTTTTTAGAAAGTTTGGCATGGAAAAGTTTGATCCAACAAATGAACAATTTGATCCACATAGACATAATGCAGCATTCCAAATCCCAGATCCTTCTAAGC
- -cacaatc
- - - - - - ccattca
- - - - - - - - - - - - -tatgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg