Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagatattgattctgttcatctttagtttctttcctagttcgttgacaaattgggttttgggtttttcattgtggctgccaactggggttgtgggtttctctcaatttgtttgttaattcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCACCTGAAGAAGAGGCCCACTGAGTTCCGTGTGGATAAAGTCCTCCAGCCCT

Basic information

species Vitis vinifera
transcript Vv19s0090g01000.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G43200.1 (Glycine max), 3'ss of exon 4
gtcagatattgattctgttcatctttagtttctttcctagttcgttgacaaattgggttttgggtttttcattgtggctgccaactggggttgtgggtttctctcaatttgtttgttaattcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCACCTGAAGAAGAGGCCCACTGAGTTCCGTGTGGATAAAGTCCTCCAGCCCT
      | |   || ||| |   ||| ||||         |||  |  | | ||| | ||| ||||||   ||| |  |||            ||| | |   |  || |||||  |  ||   |   |||||||||| ||  ||||||| |||||||| |||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||
-----gtctgatttgtgtacccatttggttt-------gattcactttctagttgtgattttggttttc--ttgggtttgc-----------atggatattgtttgatgtgttt--tgttttgggtttagGTGATTCCTGGGAAGTATGGTTTCATTGCTCAGCTGAATGAGGGTCGCCACCTCAAGAAGAGACCAACTGAGTTCCGTGTTGATAAGGTCCTCCAACCCT

upper sequence: Vv19s0090g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G10430.1 (Glycine max), 3'ss of exon 3
gtcagatattgattctgttcatctttagtttctttcctagttcgttgacaaattgggttttgggtttttcattgtggctgccaactggggttgtgggtttctctcaatttgtttgttaattcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCACCTGAAGAAGAGGCCCACTGAGTTCCGTGTGGATAAAGTCCTCCAGCCCT
    | | |   || |||     ||||||||         |||  |  | | ||| ||||| |  ||||  |||||  |||            ||| | |   |  || |||||  |  ||   |   |||||||||| || |||||||| |||||||| |||||||||||||| || ||||| |||||||| || |||||||| ||||| ||||| |||||||||||| 
----ggtctgatttatgtatccatttagttt-------gattcactttctagttgtgtttttg--ttttgcttgtgtttgc-----------atggatgttgtttgatgtgttt--tgttttgggtttaGGTGATTCCTGGGGAGTATGGTTTCATTGCTCAGCTGAATGAGGGTCGTCACCTCAAGAAGAGACCAACTGAGTTTCGTGTTGATAAGGTCCTCCAGCCC-

upper sequence: Vv19s0090g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G46230.1 (Glycine max), 3'ss of exon 3
gtcagatattgattctgttcatctttagtttctttcctagttcgttgacaaat-tgggttttgggtttttcattgtggctgccaactggggttgtgggtttctctcaatttgtttgttaattcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCACCTGAAGAAGAGGCCCACTGAGTTCCGTGTGGATAAAGTCCTCCAGCCCT
             ||||||    ||| |||| | || |  |  |   ||| || ||| |     | |||    | | | ||    ||| |||    |||        ||||  ||||            |||||||||| ||||| ||||| ||| |||||||||| || ||||| || ||||| ||||||||||| ||||||||||| || ||||| ||||| || ||||
------------gtctgttttgtttttgtttttgtcttcctatgcatacatatatggatggcatgatttctgattttgatgtgttctgtggtgaatggt-------gattttgttgt------------agGTGATTCCTGGTGAATATGGTTTCGTTGCCCAGCTTAACGAGGGTCGTCACCTCAAGAAGAGGCCAACTGAGTTCCGAGTTGATAAGGTCCTTCAACCCT

upper sequence: Vv19s0090g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G02500.1 (Glycine max), 3'ss of exon 3
gtcagatattgattctgttcatctttagtttctttcctagttcgttgacaaattgggttttgggtttttcattgtggctgccaactggggttgtgggtttctctcaatttgtttgttaattcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCACCTGAAGAAGAGGCCCACTGAGTTCCGTGTGGATAAAGTCCTCCAGCCCT
                           || | ||| ||  || |||      ||      |  |  |     | ||| ||  |    |  || || ||||       |||||  | | |||       |||||||||| ||||| ||||| ||| |||||||||| |||||||| || ||||| |||||||| || ||||||||||| || || || ||||| || ||||
---------------------------gtctgttttct--tttgtttttgtctt----cctatgcatagatatatggatggtat---gatttctgagtttgatgtgttttgt--ggtgattttgttgtagGTGATTCCTGGTGAATATGGTTTCGTTGCCCAGCTTAATGAGGGTCGTCACCTCAAGAAGAGACCAACTGAGTTCCGAGTTGACAAGGTCCTTCAACCCT

upper sequence: Vv19s0090g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G26850.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcagatattgattctgttcatctttagtttctttcctagttcgttgacaaattgggttttgggtttttcattgtggctgccaactggggttgtgggtttctctcaat-ttgtttgttaattcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCACCTGAAGAAGAGGCCCACTGAGTTCCGTGTGGATAAAGTCCTCCAGCCCT
            |  |  || |  |||  || |||   | |    | |    |||||||    |||| |   || ||   || |     ||| |   ||  ||| ||  |||||| |       | |  |||| || |||||  ||||||| ||| |||| ||||| || ||||| || ||| ||||||||||||| |||||||||||||| ||||| ||  | ||| | |
-----------gtaattgtctttcttaccttgtttgacaatctagttatg--ttgggtt----gtttgttgctgaggaatccgagatatgttttacattgttcttaagattgtttctcttgatgttat-agGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTTAACGAGGGTCGTCACTTGAAGAAGAGGCCAACTGAGTTCCGTGTAGATAAGGTGTTGCAGTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34319883|gb|CF372637.1|CF372637
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|71875415|gb|DT024470.1|DT024470
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110687647|gb|EE065295.1|EE065295
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTT
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTT
EST: gi|110713363|gb|EE089218.1|EE089218
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110706009|gb|EE083511.1|EE083511
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|29785121|gb|CB341860.2|CB341860
EST:     GTATGCAGAAAGGGCTCTTTCGATATGACGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|34362853|gb|CF404438.1|CF404438
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|27755132|gb|CB035887.1|CB035887
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|30125670|gb|CB911009.1|CB911009
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|34362434|gb|CF404019.1|CF404019
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGATGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|351042329|gb|FQ442796.1|FQ442796
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110694715|gb|EE072065.1|EE072065
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|351027186|gb|FQ440054.1|FQ440054
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|27581651|gb|CB004346.1|CB004346
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|161720567|gb|FC070933.1|FC070933
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|351057191|gb|FQ450898.1|FQ450898
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGACACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|156738823|gb|EV242944.1|EV242944
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|56408611|gb|CX016863.1|CX016863
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|27586318|gb|CB009013.1|CB009013
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110706598|gb|EE082262.1|EE082262
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAAACAAA                         GTGATTCCCGGTGAGTATGGGTTCATTGCCCAGCTGGATGAAGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110709002|gb|EE084091.1|EE084091
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110686080|gb|EE063364.1|EE063364
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAAC-AAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGC-GCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|18459843|gb|BM438121.1|BM438121
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110712183|gb|EE089512.1|EE089512
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|351046279|gb|FQ442657.1|FQ442657
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|30322130|gb|CD005392.1|CD005392
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110692404|gb|EE071610.1|EE071610
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAN                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|351042333|gb|FQ442800.1|FQ442800
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|294967108|gb|GW839983.1|GW839983
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGTGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110686209|gb|EE063605.1|EE063605
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110724312|gb|EE100031.1|EE100031
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110710147|gb|EE086230.1|EE086230
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|18459417|gb|BM437695.1|BM437695
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|30256256|gb|CB972099.1|CB972099
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGGTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|30300773|gb|CB977567.1|CB977567
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110710088|gb|EE086115.1|EE086115
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|351018382|gb|FQ439194.1|FQ439194
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|51989815|gb|CV179270.1|CV179270
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GCGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|351051861|gb|FQ455275.1|FQ455275
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGACACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|56408573|gb|CX016825.1|CX016825
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|34362011|gb|CF403596.1|CF403596
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110712896|gb|EE088345.1|EE088345
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         -TGATTCCGGGTGAGTATGGGTTCATTGCCCAACTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|71860307|gb|DT009362.1|DT009362
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|77578798|gb|DV218203.1|DV218203
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110365833|gb|EC929316.1|EC929316
EST:     CAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: CAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110689967|gb|EE066653.1|EE066653
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|71861504|gb|DT010559.1|DT010559
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|77577274|gb|DV217349.1|DV217349
EST:     TATGATGTCACTGCTTGCGAAACCAAG                         GGGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAAGGAGGGCCGCCAC
genomic: TATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110701970|gb|EE080150.1|EE080150
EST:     CTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: CTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|27579531|gb|CB002226.1|CB002226
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110728457|gb|EE104040.1|EE104040
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|71861981|gb|DT011036.1|DT011036
EST:     TCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: TCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110726736|gb|EE102778.1|EE102778
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110698832|gb|EE076778.1|EE076778
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|30297593|gb|CB974387.1|CB974387
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|33407232|gb|CF212859.1|CF212859
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAAT
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAAT
EST: gi|27579501|gb|CB002196.1|CB002196
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|110720626|gb|EE096715.1|EE096715
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACAAAG                         -TGATTCCGGGT
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGT
EST: gi|71863283|gb|DT012338.1|DT012338
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
EST: gi|156736179|gb|EV240293.1|EV240293
EST:     GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAG                         GTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC
genomic: GTATGCAGAAAGGGCTCTTTCGATATGATGTCACTGCTTGCGAAACCAAGgtcagatatt ... tcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgccaactggggttgtgggtttctctcaatttgtttgttaattcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCACCTGAAGAAGAGGCCCACTGAGTTCCGTGTGGATAAAGTCCTCCAGCCCT
                                      tgttaat  putative branch site (score: 3)
                                            ttcct  CT-rich tract
                              aatttgtttgttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagatattgattctgttcatctttagtttctttcctagttcgttgacaaattgggttttgggtttttcattgtggctgccaactggggttgtgggtttctctcaatttgtttgttaattcctgaccagGTGATTCCGGGTGAGTATGGGTTCATTGCCCAGCTGAATGAGGGCCGCCACCTGAAGAAGAGGCCCACTGAGTTCCGTGTGGATAAAGTCCTCCAGCCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG