Sequence
atgc intronic sequence ATGC exonic sequence...tgcatttctttttcaggtatgatagtgttggttattcttgccagacaattgtatggctttgaattaacagaatcgagctaaaatatgtaataaacttcagGTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGATTGAGGCTTCCTCTTATTTCCAAAGATGGTGAAATTCATGAGGAAGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00440.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G11000.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------------------------tgcatttctttttcaggtatgatagtgttggttattcttgccagacaattgtatggctttgaattaacaga-atcgagctaaaatatgtaataaacttcagGTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGATTGAGGCTTCCTCTTATTTCCAAAGATGGTGAAATTCATGAGGAAGAAA
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gttttgaattattattactggaaagtggaaagttagtttgattaatgaacagatatgactgaaaattctgttgattttggtcttagaaaatttgagtctgcacattat-gtgctcat-atgcttttttctttggcacattggtctacgctgatttatacaaaacttacatgtatacataatgtcagGTTTATCAGACTTTAGAGCATCAAATGGTTGTTGCTGAAGCAGCTCAACGATTGAGGCTACCTCTTATCTCCAAAGACGGGGAAGTTCATGATGAAGACA
upper sequence: Vv19s0090g00440.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G42870.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------------------------tgcatttctttttcaggtatgatagtgttggttattcttgccagacaattgtatggctttgaattaacagaatcg-agctaaaatatgtaataaacttcagGTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGATTGAGGCTTCCTCTTATTTCCAAAGATGGTGAAATTCATGAGGAAGAAA
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gttttgaattattattactggaaagttggtttgattaatgaacaaatatgagacctctgtgaaaatgctgttgattctggtcttagaaactttgagtctgcacatcatgtgcttaaatgcttttttct--ttggcacattggtctacgttgatttaaacataacttacatgtatatataatgtcagGTTTATCAGACTTTAGAGCATCAAATGGTTGTTGCTGAAGCAGCTCAACGATTGAGACTACCTCTTATCTCCAAAGATGGGGAGGTTCATGATGAAGACA
upper sequence: Vv19s0090g00440.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G50710.1 (Arabidopsis thaliana), 3'ss of exon 3
tgcatttctttttcaggtatgatagtgttggttattcttgccagacaattgtatggctttgaattaacagaatcgagctaaaatatgtaataaacttcagGTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGATTGAGGCTTCCTCTTATTTCCAAAGATGGTGAAATTCATGAGGAAGAAA
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---------gtttctaatctcaaaaacgtgattttttttctggaattatttgttatctcgagactcattta--tgagcataattgt-tgattttttttagGTTTATGAGACTCTAGAGCATAGGTTGGTGGTTGCTGAGGCGGCTCAGAAACTGAGGCTACCTCTTATTTCAGATGGTGGTGAAATTCATGAGGAAGAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712858|gb|FC062033.1|FC062033EST: GGGATGTTCAGGGACTATATCCACAACTAGGCTTGAAGAATTCTCCTCAG GTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGA
genomic: GGGATGTTCAGGGACTATATCCACAACTAGGCTTGAAGAATTCTCCTCAGgttttgattt ... taaacttcagGTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caattgtatggctttgaattaacagaatcgagctaaaatatgtaataaacttcagGTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGATTGAGGCTTCCTCTTATTTCCAAAGATGGTGAAATTCATGAGGAAGAAA
taaaatatgtaataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcatttctttttcaggtatgatagtgttggttattcttgccagacaattgtatggctttgaattaacagaatcgagctaaaatatgtaataaacttcagGTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGATTGAGGCTTCCTCTTATTTCCAAAGATGGTGAAATTCATGAGGAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-gcatttc
- - - - - - - -ggtatga
- - - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - cttgcca
- - - - - - - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatat