1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatccctctctatgcagtatctatgttaaaaccagtttgcttcaactgtgtttggaagtgactcttgagagtaaacttgcttacctttctcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACGTGGTTCAGATGGCTACCAACCTTAATAGTCTTCAACCCCATCTGAAAG
species | Vitis vinifera |
transcript | Vv19s0085g01130.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAG GTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACEST: gi|30251884|gb|CB969617.1|CB969617
genomic: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGgtaaatttta ... tcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATAC
EST: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAG GTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACEST: gi|30252290|gb|CB969841.1|CB969841
genomic: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGgtaaatttta ... tcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATAC
EST: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAG GTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACEST: gi|37190109|gb|CF609458.1|CF609458
genomic: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGgtaaatttta ... tcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATAC
EST: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAG GTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTEST: gi|30137494|gb|CB922832.1|CB922832
genomic: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGgtaaatttta ... tcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGT
EST: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAG GTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACEST: gi|110386755|gb|EC951377.1|EC951377
genomic: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGgtaaatttta ... tcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATAC
EST: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAG GTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACEST: gi|26267560|gb|CA818623.1|CA818623
genomic: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGgtaaatttta ... tcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATAC
EST: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAG GTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACEST: gi|29783196|gb|CB349218.2|CB349218
genomic: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGgtaaatttta ... tcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATAC
EST: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAG GTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATAC
genomic: AAGAGAAACTGGTGAAGCTTCAGAGTGAACTTGTGGGAAATGCCTCCAAGgtaaatttta ... tcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATAC
actgtgtttggaagtgactcttgagagtaaacttgcttacctttctcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACGTGGTTCAGATGGCTACCAACCTTAATAGTCTTCAACCCCATCTGAAAG
tgcttac putative branch site (score: 2)
cttgcttacctttctc CT-rich tract
taaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatccctctctatgcagtatctatgttaaaaccagtttgcttcaactgtgtttggaagtgactcttgagagtaaacttgcttacctttctcttggacagGTGACGGAGATAAGTCGTGTTTTTGAGTTGGTTAATGGAGAATTGTCATACGTGGTTCAGATGGCTACCAACCTTAATAGTCTTCAACCCCATCTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - ccctctc
- - - - - -tatgcag
- - - - - - - - - - - - - - -aaaccag
- - - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg