Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaatgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT

Basic information

species Vitis vinifera
transcript Vv19s0085g00370.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g45710.1 (Oryza sativa), 3'ss of exon 4
cttaa--tgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttc-tggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
 ||||  |||||        |||    |||     |    ||    || |||  ||||  |  |    || |  |    ||  |  |||  ||     | |||||||||||||| ||||||||||||||  | |||||||| |  ||||||||||| ||||||||||| || ||||||||| | || ||||| ||||||||  
-ttaaattgtatccgcaatgaattcaagctgtttttc--cttgagattttttgaaatatgtaatccttttaaaattttgtagtaactgtcctcaccaatctagGAACTTGACTATCTTGTTGGAGCTGTTGCCAACCCCAAAAAACCATTTGCTGCCATTGTTGGTGGATCCAAGGTGTCAACAAAGATTGGGGTGATTGAGA

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os02g07260.1 (Oryza sativa), 3'ss of exon 4
-cttaatgtatgaagtccaaatagtggctacacc-taggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
   || | | | ||     |||     || ||   || |||   |  || |||    |        | |  |  ||   | | ||  | ||  |  ||| ||||||||||||| ||||||||||||||  ||||||| |||| ||||||||| || || |||||||| || ||||| ||| | || ||||| |||||||| |
taatatttttttaatcttcaatgtattctccaaaatatgttgcataatgcttatttcagaataaaaaatacaactgtactgatat--ggttaattatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGGCCATCGTTGGTGGATCCAAGGTCTCAACTAAGATTGGGGTGATTGAGT

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G382914_T03 (Zea mays), 3'ss of exon 4
--------------------------------------------------------------------------cttaatgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
                                                                           |  |  | | ||     |  | |   |     ||   ||||  || |||   | |       |     | |||||| |    |   ||| |  | | ||||||||||||||||||||||||||||  | ||||| |||| ||||||||| || ||||||||||| || ||||| ||| | || ||||| || ||||| |
gtaataaaatgtcacccatgctcatgatcttttaagtatatttaggtactgttcagtaggatggggtaaatattttctacctttcaaaagagaccaataaatctttttaacatttcagttttttcataaataaaaaaggaaagatttgacaaa----tgactttattatctcagGAACTTGACTACCTTGTTGGAGCTGTTGCCAACCCAAAGAAGCCATTTGCCGCCATTGTTGGTGGATCCAAGGTCTCAACTAAGATTGGTGTCATTGAGT

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G17600.1 (Glycine max), 3'ss of exon 4
---cttaatgtatgaagtccaaatagtggctacacc---taggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
     ||     |       || |  | ||| ||     |   | ||   |  ||||   || ||  |  |||||| |   | |   ||||||||  | |||| ||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || |||||||| || |||||||| || || |||||||| ||||| |
gtttgtaggaactaggaagtaattgttagcttcattatatgaatgttgggtaatttatg-taatttatgcagtttattcatc-tgttatttgtttaattgtttcagGAACTTGACTATCTAGTTGGAGCTGTGTCAAACCCCAAGAGACCATTTGCTGCTATCGTTGGTGGGTCAAAGGTGTCTTCCAAGATTGGAGTTATTGAGT

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G41550.1 (Glycine max), 3'ss of exon 4
cttaatgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatact-tctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
     |||| |||||  || |  | ||| ||  ||  | |   || | | |  ||    | | |    ||  ||||  | |  | | |||  | |||| |||| ||||| || || ||||| |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| || || |||||||| |||||||
--gtttgtaggaagt--aattgttagcttcat-tatatatatattgggtaattatgtaatttatacagttgattgatctgatgtatttttaattgtttcagGAGCTTGATTATCTAGTTGGGGCTGTGTCAAACCCCAAGAGACCATTTGCTGCTATTGTCGGTGGATCGAAGGTGTCTTCCAAGATTGGAGTTATTGAAT

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G79550.1 (Arabidopsis thaliana), 3'ss of exon 3
cttaatgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatacttctttgagtttacttgaca---taacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
          | | |  ||||  | ||  ||   ||  | |||| |   ||||  | |   || | ||||||   ||   ||  | ||||||| | || | |||||||||| |||||||| ||||||||| |||||||||||| ||| |||||||| |||||||| ||||| ||||| ||| | || ||||| || ||||| |
----------gtatttaaaat--ttgcagcataaagagtatcttct---tagatgagtctctttattttactgatcagactattacttgttttattgtgtcagGAACTTGATTACCTTGTCGGAGCTGTGGCAAACCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGTCATTGAGT

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ26731 (Selaginella moellendorffii), 3'ss of exon 5
cttaatgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
                                 ||| ||||||||| | |       |||     | || | |||  | ||      |||        ||||||| |||||||| | |||||| ||||| || || || || ||||||||||| || ||||| ||||| |||||||| || || ||||||||||||||||
--------------------------------gtagattttcttttttctt-----tttcccaatgcttccctgagttgacgacgaatttgc-----cagGAACTCGACTACCTCGATGGAGCCGTGTCGAATCCTAAAAGACCATTTGCTGCCATCGTTGGAGGCTCCAAGGTGTCGTCCAAGATTGGAGTGATTGAAT

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ26420 (Selaginella moellendorffii), 3'ss of exon 3
cttaatgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
                                 ||| |||||||||  ||       |||     | || | |||  | ||      |||        |||| || |||||||||| |||||||||||| || || ||  | ||||||||||| || ||||| ||||| |||||||| || || ||||||||||||||||
--------------------------------gtagattttcttttcctt------tttcccaatgcttccctgagttgacgacgaatttgc-----cagGAGCTCGACTACCTTGATGGAGCTGTGTCGAATCCTAAACGACCATTTGCTGCCATCGTTGGAGGCTCCAAGGTGTCGTCCAAGATTGGAGTGATTGAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87586006|gb|DY474492.1|DY474492
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110699307|gb|EE076201.1|EE076201
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110397873|gb|EC963830.1|EC963830
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71858257|gb|DT007312.1|DT007312
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|30304283|gb|CB981077.1|CB981077
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|161715115|gb|FC062745.1|FC062745
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110720497|gb|EE096481.1|EE096481
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAAGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110686232|gb|EE063649.1|EE063649
EST:     GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110724013|gb|EE099467.1|EE099467
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAA                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|349828157|gb|FQ415485.1|FQ415485
EST:     GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|349824307|gb|FQ417718.1|FQ417718
EST:     GAGTTGCTAAATACTTGAAATCTTCGGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|30301262|gb|CB978056.1|CB978056
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|77588624|gb|DV223525.1|DV223525
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|351053335|gb|FQ459203.1|FQ459203
EST:     GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|161719810|gb|FC066106.1|FC066106
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGC
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGC
EST: gi|71870341|gb|DT019396.1|DT019396
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110708833|gb|EE086826.1|EE086826
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71881063|gb|DT030118.1|DT030118
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|161712835|gb|FC062358.1|FC062358
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTG
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTG
EST: gi|110691483|gb|EE069633.1|EE069633
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|349828158|gb|FQ415486.1|FQ415486
EST:     GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110685462|gb|EE062201.1|EE062201
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110733067|gb|EE108902.1|EE108902
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAA                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|77578472|gb|DV218021.1|DV218021
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110701769|gb|EE079717.1|EE079717
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|161717730|gb|FC064716.1|FC064716
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCCAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|30304082|gb|CB980876.1|CB980876
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|30303547|gb|CB980341.1|CB980341
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110703074|gb|EE079602.1|EE079602
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAAGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|30132102|gb|CB917441.1|CB917441
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71880236|gb|DT029291.1|DT029291
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|77585841|gb|DV222021.1|DV222021
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110703546|gb|EE080487.1|EE080487
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAAGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71878631|gb|DT027686.1|DT027686
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110700457|gb|EE078517.1|EE078517
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110685734|gb|EE062711.1|EE062711
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71872705|gb|DT021760.1|DT021760
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71880817|gb|DT029872.1|DT029872
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71879520|gb|DT028575.1|DT028575
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|30305376|gb|CB982170.1|CB982170
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110387417|gb|EC952080.1|EC952080
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|30304016|gb|CB980810.1|CB980810
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71856048|gb|DT005103.1|DT005103
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|351012744|gb|FQ430307.1|FQ430307
EST:     GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110685755|gb|EE062752.1|EE062752
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|161714658|gb|FC063893.1|FC063893
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71874095|gb|DT023150.1|DT023150
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGT--CAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110731726|gb|EE106391.1|EE106391
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110371427|gb|EC935445.1|EC935445
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110359104|gb|EC920037.1|EC920037
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|22012404|gb|BQ797438.1|BQ797438
EST:     TACTTG-AACCTTCGGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCA-TTGCT
genomic: TACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71867965|gb|DT017020.1|DT017020
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71859896|gb|DT008951.1|DT008951
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTAC
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTAC
EST: gi|71878679|gb|DT027734.1|DT027734
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110699045|gb|EE077239.1|EE077239
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110688519|gb|EE067167.1|EE067167
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|110709509|gb|EE085032.1|EE085032
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|37187849|gb|CF607202.1|CF607202
EST:     GGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|71877959|gb|DT027014.1|DT027014
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|351027624|gb|FQ446788.1|FQ446788
EST:     GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|30130997|gb|CB916336.1|CB916336
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTG
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTG
EST: gi|110372594|gb|EC936775.1|EC936775
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
EST: gi|33406655|gb|CF212282.1|CF212282
EST:     GAGTTGCTAAATACTTGAAACCTTCTGTTGCCGGCTTCCTCATGCAGAAG                         GAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT
genomic: GAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGgtatggtggt ... ctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT
                             acataac  putative branch site (score: 3)
                                     tttgttttct  CT-rich tract
                               ataacatttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttaatgtatgaagtccaaatagtggctacacctaggttttcttttgtttagaatacttctttgagtttacttgacataacatttgttttctggttttagGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - -ccaaata
- - - - - - - - - - - - - ctacacc
- - - - - - - - - - - - - - - - - - - - - - - - - agaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataac