Sequence
atgc intronic sequence ATGC exonic sequence...attgatactaaatgcagtttattgttaatttttttcaatctgactatttggataatttggtttttgagctgatatagacatacgctgtttgttgaggcagTTGAGGAACTTAGTCTGGGCTACATCAAAACATGATGTATATCTTATGTCGCATTTCTCTGTCATTCATTGGTCTTCATTGACTTGCAACATGTCTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G12500.1 (Glycine max), 3'ss of exon 4
attgatactaaatgcagtttattgt-taatttttttcaatctgactatttggataatttggtttttgagctgatatagac-atacgctgtttgttgaggcagTTGAGGAACTTAGTCTGGGCTACATCAAAACATGATGTATATCTTATGTCGCATTTCTCTGTCATTCATTGGTCTTCATTGACTTGCAACATGTCTGAAG
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--tcttaagcagtatcaatcattgtataggctttctaagagataggatcttgctattgtggccagttgactgacataatttattttttaaatgattgtgcagTTGAGGAATTTGGTATGGGCTACATCAAAGCATGATGTATACCTTATTTCACAGTTTTCAATAATGCATTGGTCCTCTTTGACTTGCAAAAGTTCAGAAG
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G56190.2 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------------------------------------------------------attgatactaaatgcagtttat-tgttaattttttt----caatctgactatttggataatttggtttttgagctgatatagacatacgctgtttgttgaggcagTTGAGGAACTTAGTCTGGGCTACATCAAAACATGATGTATATCTTATGTCGCATTTCTCTGTCATTCATTGGTCTTCATTGACTTGCAACATGTCTGAAG
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gtttgtctagtgcgttatataacccctgtctctattatgcttccaacaatttggtggctctctcggggtttctaaatgtaacttggtagttttttaatcataatgtagaccttccctgtgctagtattgctgatggaaccatagttttatgtgaagctgatcatagttaagactaaattatgtttgcttctttgttacagTTGAGGAATTTGGTCTGGGCTACCTCAAAACACGATGTTTATTTATTGTCCAACTACTCCATCAGCCACTGGTCTTCTTTGACAGGTTGTAGGAGTGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttggataatttggtttttgagctgatatagacatacgctgtttgttgaggcagTTGAGGAACTTAGTCTGGGCTACATCAAAACATGATGTATATCTTATGTCGCATTTCTCTGTCATTCATTGGTCTTCATTGACTTGCAACATGTCTGAAG
agctgat putative branch site (score: 4)
ataatttggttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attgatactaaatgcagtttattgttaatttttttcaatctgactatttggataatttggtttttgagctgatatagacatacgctgtttgttgaggcagTTGAGGAACTTAGTCTGGGCTACATCAAAACATGATGTATATCTTATGTCGCATTTCTCTGTCATTCATTGGTCTTCATTGACTTGCAACATGTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - aatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacgc