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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcagcacttaattttctcttttattactgttattttgcattagaagtttttattagtgttaaacacattttttttcaattttttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACGGCTCATCTTACTTCAGCATTTGTTATTTACTGTGGCCTTCTCTGGACCG

Basic information

species Vitis vinifera
transcript Vv19s0015g01340.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01340.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G47340.1 (Glycine max), 3'ss of exon 3
gtaggcagcacttaattttctcttttattactgttattttgcattagaagtttttattagtgttaaacacattttttttcaattttttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACGGCTCATCTTACTTCAGCATTTGTTATTTACTGTGGCCTTCTCTGGACCG
   |   | || ||| |        |    || ||  |||| | |  || |     |   ||| | |    || |  |   ||||| |   | ||||| ||| ||||||||||| |||||||||| |||||||||||||||||  | ||||||||||| |||||||||| |||||||||||||||  | ||||| |
---gttggaacataaataaaataaattcctctctttatttgaagttaaattgaccttccctgtcaga----ttctaataacattttctttctttagGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCAGCTCATCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTG

upper sequence: Vv19s0015g01340.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G01420.1 (Glycine max), 3'ss of exon 3
gtaggcagcacttaattttctcttttattactgttattttgcattagaagtt---tttattagtgttaaacacattttttttcaattttttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACGGCTCATCTTACTTCAGCATTTGTTATTTACTGTGGCCTTCTCTGGACCG
           | ||   |   |  ||| | |     | |  ||| ||||||   || |  ||  ||   || ||| |  |   ||||| |   | ||||||||| ||||||||||| |||||||||| |||||| ||||||||||  | ||||||||||| ||||| || | |||||||||||||||  | ||||| |
---------gttgaaacataaataatataaattcctctctttatttgaagttaaattgaccagccttgt-cagattctaataacattttctttctttagGAGCCACCATCTGAATATTCTCAGCCAAGGGTAAGCTCTTATCGTCTTGCAGCTCATCTTACATCAGCTTTCGCTATTTACTGTGGCCTCTTTTGGACTG

upper sequence: Vv19s0015g01340.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G03250.1 (Glycine max), 3'ss of exon 5
gtaggcagcacttaattttctcttttattactgttattttgcattagaagtttttattagtgttaaacacattttttttcaattttttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACGGCTCATCTTACTTCAGCATTTGTTATTTACTGTGGCCTTCTCTGGACCG------------------------
                                                                   || ||| |  |   ||||| |   | ||||| ||| | | ||||||| || ||||||| |||| ||||||||||||  |  |||||||||| ||| ||||||||||||||||| ||||  | ||||                           
-----------------------------------------------------------------gtcagattctaataacattttctttctttaggaaccaccgtttgaatattcttagCCAAGGGTAACCCCTTATCGTCTTGCAACTCATCTTACATCATCATTTGTTATTTACTGTTGCCTCTTTTGGATTACACTTATGTTTGTTATGCCTAAAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546299|gb|CF514531.1|CF514531
EST:     GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAG                         GAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
genomic: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGgtaggcagca ... ttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
EST: gi|110387855|gb|EC952553.1|EC952553
EST:     GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAG                         GAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
genomic: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGgtaggcagca ... ttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
EST: gi|110730089|gb|EE106773.1|EE106773
EST:     GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAAAA                         GAGCCAGCATCCTGA-TATGCTCAGCCAAGA
genomic: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGgtaggcagca ... ttccttgtagGAGCCAGCATC-TGAATATGCTCAGCCAAGA
EST: gi|27582559|gb|CB005254.1|CB005254
EST:     GGTTAAAAGTGGTTTAGAG                         GAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
genomic: GGTTAAAAGTGGTTTAGAGgtaggcagca ... ttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattagaagtttttattagtgttaaacacattttttttcaattttttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACGGCTCATCTTACTTCAGCATTTGTTATTTACTGTGGCCTTCTCTGGACCG
                            cattttttttcaattt  CT-rich tract
         tttttattagtgttaa  TA-rich tract