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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcatatttcccttttgacttatataccttgtgatagattaatactttttaaaatttttttttaatgcctctataaatccagGACGGCCTATGGGGCGTGGTCGGGGCCGTGGGCGTGGACGTGGACGTGGTCGAGGCCGCTAGTTACCTTGTAGTTCAAATTTCTTGTCACTTCTGGTTAT

Basic information

species Vitis vinifera
transcript Vv19s0015g01330.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G52210.1 (Glycine max), 3'ss of exon 4
--------------gtattgcatatttcccttttgacttatataccttgtgatagattaata-----ctttttaaaatttttttttaatgcctct-----ataaatccagGACGGCCTATGGGGCGTGGTCGGGGCCGTGGGCGTGGACGTGGACGTGGTCGAGGCCGCTAGTTACCTTGTAG--TTCAAATTTCTTGTCACTTCTGGTTAT
                | | || | ||  | |      |  || | || | || | ||  |       |  | |   ||  |||||||    | |       |  ||||||    ||| |||| ||||| || ||  | || ||||| ||||| ||||| || ||  |   |||   ||| |   |||    || ||||  | | |||||||
tactgtatatagtttaactacaaaatttacatccatgctcaattcattctaattgtttcttggtgagttcctcaggtttaatttttaacatattttcatcgcatttccaggGAAACCTTTGGGACGTGGACGAGGAAGGGGCCGTGGGCGTGGGCGTGGACGTGGTGGTC-GTTGAGTTGCACCTTTCTTCATTTTTGTGGCATGTGGTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtgatagattaatactttttaaaatttttttttaatgcctctataaatccagGACGGCCTATGGGGCGTGGTCGGGGCCGTGGGCGTGGACGTGGACGTGGTCGAGGCCGCTAGTTACCTTGTAGTTCAAATTTCTTGTCACTTCTGGTTAT
                                ttttaat  putative branch site (score: 3)
                                        cctctat  CT-rich tract
          attaatactttttaaa  TA-rich tract