Sequence
atgc intronic sequence ATGC exonic sequence...ctgcctttatagctaaggagggatgggtgtgtatgtatgctggcatttgctgccgctgatttaaccttgacttcttggtctttatttttcttgtgtgtagATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G12450.1 (Glycine max), 3'ss of exon 3
ctgcctttatagctaaggagggatgggtgtgtatgtatgctggcatttgctgccgctgatttaaccttgacttcttggtctttatttttcttgtgtgtagATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAG
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gtatttcatcaattcaaaatggcacaac-caaatatcaagtgatctttttt-----tggctcacacttgctctgttgctctctactt--cttg---gtagGTTTCTTAAAGCCAGGGACTTTAACATTGAGAAGACGATTCAGATGTGGGAAGAAATGCTTACGTGGCGAAAGGAATATGGAACTGATACCATCCTTGAG
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G48060.1 (Glycine max), 3'ss of exon 3
ctgcctttatagctaaggagggatgggtgtgtatgtatgctggcatttgctgccgctgatttaaccttgacttcttggtctttatttttcttgtgtgtagATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAG
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gtatttcatcaattcaaaagggtacaataagcaaatatcaagtgatcttttttt--ttgctcacacttgctatgttgctctctaatt--cttg---gtagGTTTCTTAAAGCTAGGGACTTAAACATTGAGAAGACAGTTCAGATGTGGGAAGAAATGCTTACTTGGCGAAAGGAATATGGAACTGATACCATCCTTGAG
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G17830.1 (Glycine max), 3'ss of exon 2
ctgcctttatagctaaggagggatgggtgtgtatgtatgctggcatttgctgccgctgatttaaccttgacttcttggtctttatttttcttgtgtgtagATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAG
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--gttctttttctttttct----tttgcttttttgtttttaattattt-ttgtcacttgttttg--ttgaatg--tgcattttattttggtcggtggtagGTTTCTTAAAGCGAGGGACTTTAACATCGAGAAGACGATTCAGATGTGGGAAGAGATGCTAACTTGGAGAAAAGAATATGGAACTGACGCTATCCTTCAG
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G55690.3 (Arabidopsis thaliana), 3'ss of exon 4
--------ctgcctttatagctaaggagggatgggtgtgtatgtatgctggcatttgctgccgctgatttaaccttgacttcttggtct-ttatttttcttgt--gtgtagATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAG
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gtttgtctgttctatagtagctacatacacactctggtcgctttagctaaaaacatgatgt-gttg--ctaatactgtcaagctaatcaattattcattttgaaaatgtagGTTTTTGAAAGCTAGGGATCTTAACATTGAAAAAACCACCCAGTTGTGGGAAGAAATGCTTAGATGGAGAAAAGAGTATGGGACAGATACCATACTAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgctgccgctgatttaaccttgacttcttggtctttatttttcttgtgtgtagATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAG
cttcttggtctttatt CT-rich tract
tctttatttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgcctttatagctaaggagggatgggtgtgtatgtatgctggcatttgctgccgctgatttaaccttgacttcttggtctttatttttcttgtgtgtagATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
ctgcctt
- - - - - - - - - - - - gggtgtg
- - - - - - - - - - - - - - - - - - - gctggca
- - - - - - - - - - - - - - - - - - - - - - - - gctgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttgg