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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG

Basic information

species Vitis vinifera
transcript Vv19s0015g01010.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g50760.1 (Oryza sativa), 3'ss of exon 2
gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
                       ||| | | ||    |  | ||| | |   |||    |  | |  | |||| |     | || |   ||       |    |  || |  ||     |||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| || || || ||||||||||| ||||| ||  ||
-----------------------gtaatgttttctc-caaatgctatcttgtaggatgtttgttagccaagtgaagt-tatatgctaagtgtggcaccactgatggttctgcataat-tttgcagCTTCAAGCTTATTTTCTTGTGCTTGATGATATTATGGACAACTCTCAAACACGACGTGGCCAGCCTTGCTGGTTTAGGGTGCCTCAG

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g50050.1 (Oryza sativa), 3'ss of exon 3
gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
          | | |     | |||||  | |   | |    | || |        | | |||  || ||   |||   || |          || || |   || || | |  |  || |||||||||| || ||||| || || ||||||||||| ||||||||||| || || || |||||  |||| || ||||| ||| ||||||||
----------gtacatgatacttgtatgatttagtgacctgggattat----gaaacaacaatattagcaaaatatt--ttcta---------aactttt---ttgttctttgagtaacctgcagCTTCAGGCCTATTTTCTGGTTCTTGATGATATAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAG

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G147721_T01 (Zea mays), 3'ss of exon 2
gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttg-catgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
                       ||| |   |||   |||      ||||     |   | ||  || |||  |     || || |   |||| | ||||   |    |||||      ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| || || |||||||||||||| || || ||  ||
-----------------------gtactac-ttacttctgtgttgctttcaagcattttttatgttaacagaatgaattttctgctaatatgaaattttaaatcactatttct---tatcttgcagCTTCAAGCTTATTTTCTTGTGCTTGATGATATTATGGACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G098569_T01 (Zea mays), 3'ss of exon 2
gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
                        || ||  ||  |  ||     ||||||    |   ||||  ||  ||  |     || || |   |   |||||       || ||   || |  || ||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| || || || ||||||||||| || || ||  ||
--------------------gtactagttccttctgtttg-----ttttctatcatttttaatattaatagattgcattttctgctaatttggaattttaattcactatttcttgtc--ttacagCTTCAAGCTTATTTTCTTGTGCTTGATGATATTATGGACAACTCCCAGACACGGCGTGGCCAGCCTTGCTGGTTTAGAGTGCCACAG

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G168681_T01 (Zea mays), 3'ss of exon 3
gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
                       ||||||| ||     |    |     ||   | |   ||  || |||||  |  |    ||      |   || || |    ||  ||      | || |||||||| || |  || ||||||||||||||||| |||||| |||| || || ||||| || || ||||||||||||||||| ||  ||
-----------------------gtattttttt----ttttgtcccccactgttgccaggaaaaatgccagtcaa--ggaactgagagtggctcatctaagttcgctcgtcg----tattt-cagCTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G12780.1 (Glycine max), 3'ss of exon 3
gta-ggcaacagaatacctcc-cctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
||| |||    |||  | |   ||| | || | | || | | || ||  |||| |       |    |   | |||   |   |||  |   |  |  |||||  |   | |  |||    ||||||||||| |||||||| ||||| |||||||| |||||||||||||| || ||||| || ||||| || |||||||| || || ||||||
gtatggctgttgaaagcttttgcctttcttgtttgaatgattaaactagttctaatcgtttcagatgt-ttactgtgatggcattgggg---gggatcttatgattgtctgttgatgggttttgcagCTTCAGGCATATTTTCTTGTTCTTGATGACATTATGGATAACTCTCACACACGCCGTGGTCAGCCATGCTGGTTTAGAGTGCCCAAG

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G01820.3 (Glycine max), 3'ss of exon 3
gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcat---gacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
||| | ||    | | ||      | | |||||     ||||   || |   || ||  ||||| |  |||    |  || |  | ||||   |  |  |||||      |||  |||    ||||||||||| |||||||| ||||| |||||||| |||||||||||||| || ||||| || || || || |||||||| || || ||||||
gtatggaagttgaaagcttatgcttttcttgtt-----tgaatgattatactagttc--taatcgtttcagatgtttactgtgatggcattggggtatcttatgatcgtcttttgatgggttttgcagCTTCAGGCATATTTTCTTGTTCTTGATGACATTATGGATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G47770.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
                      |     |  | ||| || |  ||||   ||      |  |  | |        || || |   |  ||| |  | |    | || | |  ||     |||||||| ||||| |||||||||||||||||||||||||||||||||||    || || || |||||||||||||||||||| |||||  ||
-------------------gtataccaatgataaagacttatcctttcaatctctattagtaatagatactctcctctctctctctttatgtcgctatcactcatcatattcattatctttgcagCTCCAAGCTTATTTCCTTGTGCTTGATGATATTATGGATAACTCTGTCACTCGCCGTGGTCAACCTTGCTGGTTCAGAGTTCCTCAG

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G17190.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaggcaacagaatacctcccctgtattttgttaaggctgaagctttttctcaggtccataatcataccagtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG-------------
                                                          ||     |   | |      ||| | || |||  ||||       || | ||   |  || |||||||||||||| |||||||||||||||||||| || ||||| |||||    ||||| || || || ||||| ||||| ||    || |||             
-------------------------------------------------------gtaattcctcttttacttctcttcttatctttcatctcaatgctcattttgtatttgcttgcatttgcagCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718315|gb|FC067264.1|FC067264
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|161707433|gb|FC057709.1|FC057709
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|110702878|gb|EE079232.1|EE079232
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|110396453|gb|EC962139.1|EC962139
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|22013972|gb|BQ799006.1|BQ799006
EST:     GCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: GCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|110729204|gb|EE105291.1|EE105291
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|71877000|gb|DT026055.1|DT026055
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|30256278|gb|CB972121.1|CB972121
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|46917987|gb|CN547316.1|CN547316
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|71860763|gb|DT009818.1|DT009818
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|110698392|gb|EE075834.1|EE075834
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|77579770|gb|DV218763.1|DV218763
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|110375001|gb|EC939952.1|EC939952
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|161709928|gb|FC060567.1|FC060567
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|71855535|gb|DT004590.1|DT004590
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|37189469|gb|CF608818.1|CF608818
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|110687343|gb|EE064671.1|EE064671
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
EST: gi|71855094|gb|DT004149.1|DT004149
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCC
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCC
EST: gi|46917875|gb|CN547204.1|CN547204
EST:     CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGG                         CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA
genomic: CTGATGACGAAGTTTTTCTTGCATGTGTCCTGGGTTGGTGCATTGAATGGgtaggcaaca ... ccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtatcgcttttgttgcatgacaatttatgccttcttttctatgccacttgcagCTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAG
                               ccttcttttctatgcc  CT-rich tract
                     acaatttat  TA-rich tract