Sequence
atgc intronic sequence ATGC exonic sequencegtaaatgccatctggtctcttgtgtatgtgcttattaaactcataaatatttaccttgccaactgatcacatagccatttatagGGGTAAAGAGGGATGCTGACGATCGAATCGTTCCGCGGAGTGTAGATGCTGATGATTCTGATATTGAAGTCAAAAGTGATGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g00980.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G15050.3 (Glycine max), 3'ss of exon 1
----gtaaatgccatctggtctcttgt-gtatgtgcttattaaactcataaatatttaccttgccaactgatcacatagccatttatagGGGTAAAGAGGGATGCTGACGATCGAATCGTTCCGCGGAGTGTAGATGCTGATGATTCTGATATTGAAGTCAAAAGTGATGAGAG---
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gtgaaaaaataagataaggaaagaaaccataattgttttctatattcagtattgttgatt-----gataggtcctttatc--ttgacagGATCGAAGAGAGAAATGGAAGATCACATTGTTCCACGTAGTGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGATGACAG
upper sequence: Vv19s0015g00980.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G15050.2 (Glycine max), 3'ss of exon 2
----------------------------------------------gtaaatgccatctggtctcttgtgtat-gtgcttattaaactcataaatatttacc-ttgccaactgatcacatagccattt--atagGGGTAAAGAGGGATGCTGACGATCGAATCGTTCCGCGGAGTGTAGATGCTGATGATTCTGATATTGAAGTCAAAAGTGATGAGAG---
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gtattctatctcctaactaaaatactttgcaatggccttccatctaaaagaggtgaaaaaataagataaggaaagaaaccataattgttttctatattcagtattgttgattgataggtcctttatcttgacagGATCGAAGAGAGAAATGGAAGATCACATTGTTCCACGTAGTGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGATGACAG
upper sequence: Vv19s0015g00980.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G04620.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------------gtaaatgccatctggtctcttgtgtatgtgcttattaaactcataaatattta-ccttgccaactgatcacatagccattt--atagGGGTAAAGAGGGATGCTGACGATCGAATCGTTCCGCGGAGTGTAGATGCTGATGATTCTGATATTGAAGTCAAAAGTGATGAGAG---
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gtattctatctataattagtatacatttactaaaatactttgaaatggccttctatctaaaagaggaggaagaaaaagaagataaggaaagaaaccataattgtattttatattcagtattgttgactgatgggtcctttatcttgacagGTTCCAAGAGAGACATTGAAGATCGCATTGTTGCTCGTAGTGTTGATGCAGATGATTCTGACGTTGAAGTCAAAAGTGATGATGACAG
upper sequence: Vv19s0015g00980.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G13200.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaatgccatctggtctcttgtgtatg-tgcttattaaactca---taaatatttacct----tgccaactgatcacatagccattta--tagGGGTAAAGAGGGATGCTGACGATCGAATCGTTCCGCGGAGTGTAGATGCTGATGATTCTGATATTGAAGTCAAAAGTGATGAGAG---
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gttagagaaattcatttatttatttatgatcgttatttgtgtcacattagatagtttgatcgtgtgttttctaacctttataccctctatttagACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCAGTGTAGATGCTGATGATTCTGATGTTGATATCAAAAGTGACGATGATAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcttattaaactcataaatatttaccttgccaactgatcacatagccatttatagGGGTAAAGAGGGATGCTGACGATCGAATCGTTCCGCGGAGTGTAGATGCTGATGATTCTGATATTGAAGTCAAAAGTGATGAGAG
aactgat putative branch site (score: 3)
ttaaactcataaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatgccatctggtctcttgtgtatgtgcttattaaactcataaatatttaccttgccaactgatcacatagccatttatagGGGTAAAGAGGGATGCTGACGATCGAATCGTTCCGCGGAGTGTAGATGCTGATGATTCTGATATTGAAGTCAAAAGTGATGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG