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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taattatttttttttatcagacttaagtttttaattattgttcctggaatttttttgtaaccaagcttaaccttttcttttcttgcacctcattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGAAGCAGCCAGCTGACCATCAAGGAGCCATCAGCCAATGTAGTCCTCTTGG

Basic information

species Vitis vinifera
transcript Vv19s0015g00910.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110388650|gb|EC953423.1|EC953423
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110399009|gb|EC965494.1|EC965494
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110717435|gb|EE093287.1|EE093287
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|27580981|gb|CB003676.1|CB003676
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110371810|gb|EC935934.1|EC935934
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110717889|gb|EE094139.1|EE094139
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|22013908|gb|BQ798942.1|BQ798942
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|351012536|gb|FQ430100.1|FQ430100
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110697601|gb|EE074734.1|EE074734
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110389592|gb|EC954445.1|EC954445
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|27579888|gb|CB002583.1|CB002583
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|37185818|gb|CF605171.1|CF605171
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110701668|gb|EE079504.1|EE079504
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|34543663|gb|CF511895.1|CF511895
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110406646|gb|EC972226.1|EC972226
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|161719030|gb|FC067650.1|FC067650
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|34548452|gb|CF516684.1|CF516684
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|27586625|gb|CB009320.1|CB009320
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110701833|gb|EE079853.1|EE079853
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|352787156|gb|FQ477776.1|FQ477776
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|71865597|gb|DT014652.1|DT014652
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110407381|gb|EC972981.1|EC972981
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110702351|gb|EE080963.1|EE080963
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|34416767|gb|CF415521.1|CF415521
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|34548537|gb|CF516769.1|CF516769
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110399814|gb|EC966341.1|EC966341
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110408023|gb|EC973644.1|EC973644
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA
EST: gi|110717358|gb|EE093146.1|EE093146
EST:     AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAG                         CTTTACACAAAGGATGCATCCAAGAACTGGAGGCTTGCTGGATCAGATGGA
genomic: AGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGgttagtcctt ... cattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatttttttgtaaccaagcttaaccttttcttttcttgcacctcattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGAAGCAGCCAGCTGACCATCAAGGAGCCATCAGCCAATGTAGTCCTCTTGG
                         ccttttcttttcttgc  CT-rich tract
     ttttttgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taattatttttttttatcagacttaagtttttaattattgttcctggaatttttttgtaaccaagcttaaccttttcttttcttgcacctcattgtccagCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGAAGCAGCCAGCTGACCATCAAGGAGCCATCAGCCAATGTAGTCCTCTTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - ttcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa