Sequence
atgc intronic sequence ATGC exonic sequence...tttttgataattccacgcctagtctcttagttgttttgtgctgtcctagttaactattctgttttctttgttgctcattgttacctgtggccatataaagGCTCTGGAATCTGGCCAGCTAGCTCCAGGTGGAGTAGTGACAGAAGGCAGTGCTGGTAGCACTGCCATTAGCCTTGCTACTGTGGCTCCTGCATATGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G01780.2 (Glycine max), 3'ss of exon 2
tttttgataattccacgc-ctagtctctt-agttgttttgtgctgtcctagttaa-ctattctgttttctttgttgctcattgttacctgtggcca--tataaagGCTCTGGAATCTGGCCAGCTAGCTCCAGGTGGAGTAGTGACAGAAGGCAGTGCTGGTAGCACTGCCATTAGCCTTGCTACTGTGGCTCCTGCATATGGAT
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---tctccaacctgatgaactagtcttttgagttggactttcctcttatgcttaagtcataacagtatcagccttaag-attgtc-cctatgattgattgcgcagGCTCTAGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTGTTGCTCCTGCCTACGGGT
upper sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G46950.1 (Glycine max), 3'ss of exon 4
tttttgataattccacgcctagtctcttag-ttgttttgtgctgtcctagttaa-ctattctgttttctttgttgctcattgttacctgtggccatataaagGCTCTGGAATCTGGCCAGCTAGCTCCAGGTGGAGTAGTGACAGAAGGCAGTGCTGGTAGCACTGCCATTAGCCTTGCTACTGTGGCTCCTGCATATGGAT
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--tcttctatctgacaaactagtcttttgggttggactttcctcttatgcttaagtcataacaatttcacccttaagatttctcctacgattgattgcacagGCTCTGGAATCTGACCAGCTACGTCCAGATGGAATTGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTATTGCTCCTGCGTATGGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctagttaactattctgttttctttgttgctcattgttacctgtggccatataaagGCTCTGGAATCTGGCCAGCTAGCTCCAGGTGGAGTAGTGACAGAAGGCAGTGCTGGTAGCACTGCCATTAGCCTTGCTACTGTGGCTCCTGCATATGGAT
agttaac putative branch site (score: 3)
atataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttgataattccacgcctagtctcttagttgttttgtgctgtcctagttaactattctgttttctttgttgctcattgttacctgtggccatataaagGCTCTGGAATCTGGCCAGCTAGCTCCAGGTGGAGTAGTGACAGAAGGCAGTGCTGGTAGCACTGCCATTAGCCTTGCTACTGTGGCTCCTGCATATGGAT
- - - - - - ccacgcc
- - - - - - - - - - - - - - - - - - - -gctgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacctgt