Sequence
atgc intronic sequence ATGC exonic sequence...gttgacttggagacaatgtattctgtgtattttcctttttccaccagcatataataatctcatggacaataacatgtaacttcaatttttgaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G16650.1 (Glycine max), 3'ss of exon 3
--gttgacttggagacaatgtattctg-tgtattttcctttttccaccagcatataataatctcatggacaataacatgtaacttcaatttttgaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGG
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ttttccgtttctgtttcattcatgcagatgcattcggtgtgttggatgtgcattgtgcaataatagattgaacaatatgcttttcttgtgtct--acat-cagGTGATGTGAATGAAGCACTGTGCTGGGATTTGAGGGTTCACATAGCTTTAGATGTGGCACGAGGCTTGGAATATCTTCATAATGGG
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G41510.1 (Glycine max), 3'ss of exon 4
--gttgacttggagacaatgtattctgtgtattttcctttt-tccaccag-catataataatctcatggacaataacatgtaacttcaatttttgaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGG
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ttttttccttttttttgtttcattcctttcagatgcatttggtgcattggatttgcaataaaagattgaataa----atatggttttcttgtctctatattcagGTGATGTGAATGAAGCACTGTCCTGGGATTTGAGGGTTCCCATAGCTTTAGATGTGGCAAGAGGCTTGGAATATCTTCATAATGGG
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G36140.1 (Glycine max), 3'ss of exon 4
---gttga--cttggagacaatgtatt-ctgtgtattttccttttt--ccaccagcatataataatctcatggacaataacatgtaacttcaatttttgaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGG
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gtacttgaaactatgtgcctatcaattgttgtgcatttttttgggtgattccttgcaagttcaacttccatatgcaataa----taacct--gtctct--atattcagGTGAAGAGAATGGAGCTCTTGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGG
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G34410.1 (Glycine max), 3'ss of exon 4
---gttgacttggagacaatgtattctgtgtattttcctttttccaccagcatata-ataatctcatggacaataacatgtaacttcaatttttgaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGG
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taagctcgttatgaaatagtactttgatgcaatgttcctttcaagttcaacttccacatgcattaataaatga-agcttatgtacttgtctct---atattcagGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713605|gb|FC063415.1|FC063415EST: GCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATG ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAG
genomic: GCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggc ... gaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcatataataatctcatggacaataacatgtaacttcaatttttgaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGG
taacttcaattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgacttggagacaatgtattctgtgtattttcctttttccaccagcatataataatctcatggacaataacatgtaacttcaatttttgaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- tgacttg
- - - - -gagacaa
- - - - - - - - - - - - - - - - - - - ttccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataac