Sequence
atgc intronic sequence ATGC exonic sequence...tgtatgcaagaaaaaaaaaaattcacaaaagctgtttcctgttcttgctgtgtatatctatagctgtcttcaattcataatgtcatgtcactctggacagATTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTCGGCTTGCCAGTTTTTAGTATTCATGGAAATCATGATGATCCTGCTGGAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 3'ss of exon 4
---------------------------------------------------------------------------tgta----tgcaagaaaaaaaaaaattcacaaaagct---gtttcctgttcttgctgtgtatatctata-gctgtcttcaattcataatgtcatgtcactct----gg-------acagATTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTCGGCTTGCCAGTTTTTAGTATTCATGGAAATCATGATGATCCTGCTGGAGTG
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gttttgacgatgagttatatcactctatcatgccatttttttcttgagtgtactctaaatttggtgatccctcaatgtaatctttcataaaagtgtcacttttgctgaaatttaggtttgatatatcatacgtgtatgcagatatgcattttccccttaattttcttacatgaattttcttggtacaatcacagATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTATCCATGGAAACCATGATGATCCAGCTGGTGTG
upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G106056_T01 (Zea mays), 3'ss of exon 5
----------------------------------------------------------------------------------tgtatgcaagaaaaaaaaaaattcacaaaagctgtttcctgttcttgctgtgtatatctatagctgtcttcaattcataatgtcatgtcactctggacagATTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTCGGCTTGCCAGTTTTTAGTATTCATGGAAATCATGATGATCCTGCTGGAGTG
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gttccatgctttagcgatactctaaattagagacaacaccatagaagtacttgcagcaatgttgttcacttttgaattcttttgtttcacatatcgtttgtggactagtgaaaatgtgtaaatacatgtatgtgtgt-tctctagttctcatacgataaaattcttattgcactct---cagGTTTGGTAAGGTAAATTATGAAGACCCAAACTTTAACGTTGGTCTGCCTGTGTTCACCATTCATGGAAATCATGATGACCCTGCTGGAGTG
upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------------------tgtatgcaag-aaaaaaaaaaattcacaaaagctgtttcctgttcttgctgtgtatatctatagctgtcttcaattcataatgtcatgtcactctggacagATTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTCGGCTTGCCAGTTTTTAGTATTCATGGAAATCATGATGATCCTGCTGGAGTG
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gtgagactctatcctttctgctattaatctaatcataacaggaaataatttcaactgaactaattaattggcaaa--ttggctcaaattcgtg-tatagatctacgtattcttattaatcccttgacattatttt-ctggctacagGTTTGGTCAAGTCAATTACGAGGATCCACACTTCAATGTAGGCTTGCCCGTGTTCAGTATTCATGGAAACCATGATGATCCAGCCGGAGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctgtgtatatctatagctgtcttcaattcataatgtcatgtcactctggacagATTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTCGGCTTGCCAGTTTTTAGTATTCATGGAAATCATGATGATCCTGCTGGAGTG
tcactct CT-rich tract
tatatctata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtatgcaagaaaaaaaaaaattcacaaaagctgtttcctgttcttgctgtgtatatctatagctgtcttcaattcataatgtcatgtcactctggacagATTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTCGGCTTGCCAGTTTTTAGTATTCATGGAAATCATGATGATCCTGCTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
tgtatgc
- - - -aagaaaa
- - - - - aaaaaaa
- - - - - - - - - - - - -caaaagc
- - - - - - - - - - - - - - - - tgtttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc