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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcaattaatcaggacaaatatgattcatgtaaaatagaagtaccactgaatttcatgatgagttcaatacaaatttgtcatataaatgtactaagtatgctattccttctataaaatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCAT

Basic information

species Vitis vinifera
transcript Vv19s0014g03160.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G35050.2 (Glycine max), 3'ss of exon 3
gtactgcaattaatcaggacaaatatgattcatgtaaaatagaagtaccactgaatttcatgatgagttcaatacaaatttgtcatataaatgtactaagtatgctattccttctataaa-atgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCAT
                                              |  |     ||| ||  ||||||| |       || ||| |  | |    |   | |  ||| |    | |    ||  | ||||||||||||| || |||||||| ||||| ||||| ||||| |||||||| |||||||||||| |    || ||| | |||||||| ||||||||||||||
-------------------------------------gtctagttcattagcatgttt-attgtgagttccagtt---cttatcacaccattaggttgcatttcttatgctgattgtgtgtattcaacagGGAACACAAACACATTGGCTGGTAATGTACCTCCCAAGGCTAACCTTGGTGACTTGAGGGGACTTCAGGGTGGTTTGAATGGGCTAAACAGCTCAGCCAT

upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G38160.1 (Glycine max), 3'ss of exon 3
gtactgcaattaatcaggacaaatatgattcatgtaaaatagaagtaccactgaatttcatgatgagt-tcaatacaaatt--tgtcatataaatgtactaagtatgctattccttctataaa-atgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCAT
                                  |||   |    ||  | |   ||| ||  |||   |  ||    |||   |   | ||    |  ||    ||||  |  || | |||| || || |||| ||||| || || ||||||||||||||||| || ||||| |||||||| ||| |||||||| | || |||||  | |||||||| ||||  ||||||||
---------------------------------ataatgcattgttagtaattctttttatagtgaacctttatttgtattgaaggtttttaggattcatataggtgctgatgattttgtaaatatcaaacagGAAACACCAACACATTGGCTGGAAATGTGCCACCCAAGGCTAACCTTGGTGACATGAGGGGACTAGCTGGAGGCTTGAATGGGCTAAACACTTCAGCCAT

upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G23140.1 (Glycine max), 3'ss of exon 2
-----------------------------------gtactgcaattaatcaggac--aaatatgattcatgtaaaatagaagtaccactgaatttcatgatgagttcaatacaaatt--tgtcatataaatgtactaagtatgctattccttctataaa-atgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCAT
                                    |  || | || | ||  |   ||  |||  | |  |||   |    ||  | |   |||  ||   |  |  ||  | |||   ||  | |     |  ||    ||||  |  |||| |||| || || |||| ||||| || |||||||||||||||||||| || ||||| |||||||                                                    
gtattagatgttgtaattcccataggatccatcacatgatgaatttcaccaataataaagaatgtgttagataatgcattgttagtaattcttttattgtgaacctttatttatattgaagttttttgggattcatattggtgctgatgattctgtaaatatcaaacagGAAACACCAACACCTTGGCTGGAAATGTGCCACCCAAGGCTAACCTTG----------------------------------------------------

upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G54190.2 (Arabidopsis thaliana), 3'ss of exon 2
gtactgcaattaatcaggacaaatatgattcatgtaaaatagaagtaccactgaatttcatgatgagttcaatacaaatttgtcatataaatgtactaagtatgctattccttctataaaatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCAT
                                | |  | |      |  |    | | | | |||   | | |||  | |    |    ||  |   || | |  |     || | |   ||  | |||| ||||| ||||| |||||||| ||||| ||||||||||| || ||||| || ||||||||| | ||||| ||  | || ||||| |||||||| || ||
-------------------------------gtctgtagtctcctcataagaagaatgctttatgtacttactacttactctaaaccctaa-atctgaaatcttattcgttttgtttcttattgagcagGAAACACTAATACATTGGCTGGTAATGTACCTCCAAAGGCTAATCTTGGTGATTTGAGGGGACTAGCAGGCGGGTTGAACGGGCTAAACAGCTCGGCGAT

upper sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G03630.2 (Arabidopsis thaliana), 3'ss of exon 3
gtactgcaattaatcaggacaaatatgattcatgtaaaatagaagtaccactgaatttcatgatgagttcaatacaaatttgtcatataaatgtactaagtatgctattccttctataaaatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCAT
                                          || || ||| ||    | ||   | ||| |   | ||   || ||  |    || | | ||| | ||  ||||||    |    |||| ||||||||||| |||||||| ||||| || |||||||| |||||||| ||| | || ||  | ||   |||  | |||||||  ||||| |||   ||
----------------------------------------gtaaataacacaga-caacttgtccatttccaccaagatagttcctagtatcaaacaatgaatgttctt--ttctatgttcttg--cagGAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAGACCTAAGAGGCTTAGCGTCAGGATTGAATGGGCAAAACAGTTCAATGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71873626|gb|DT022681.1|DT022681
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|71866535|gb|DT015590.1|DT015590
EST:     GCAATCTGATTACCCATCAAAGTGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|77586160|gb|DV222178.1|DV222178
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|349825166|gb|FQ415713.1|FQ415713
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|30251393|gb|CB969126.1|CB969126
EST:     ATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: ATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|71870530|gb|DT019585.1|DT019585
EST:     AATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTTCAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: AATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110372953|gb|EC937151.1|EC937151
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|351029963|gb|FQ430705.1|FQ430705
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|27586041|gb|CB008736.1|CB008736
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110373717|gb|EC938012.1|EC938012
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|71866045|gb|DT015100.1|DT015100
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|71869221|gb|DT018276.1|DT018276
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTC
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTC
EST: gi|71868514|gb|DT017569.1|DT017569
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|349825165|gb|FQ415712.1|FQ415712
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|349828186|gb|FQ415514.1|FQ415514
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|77581250|gb|DV219551.1|DV219551
EST:     GTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|71870299|gb|DT019354.1|DT019354
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|30320534|gb|CD003796.1|CD003796
EST:     ACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: ACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110393355|gb|EC958532.1|EC958532
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|351043250|gb|FQ443971.1|FQ443971
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GAAACACAAATACCT
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCT
EST: gi|110709757|gb|EE085497.1|EE085497
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|349825101|gb|FQ415648.1|FQ415648
EST:     GCAATCTGATTACCCATCANAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCAAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|30251314|gb|CB969047.1|CB969047
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|351012575|gb|FQ430139.1|FQ430139
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTTGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTT-GGG
EST: gi|110361119|gb|EC924572.1|EC924572
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|351048774|gb|FQ449642.1|FQ449642
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGG
EST: gi|351033062|gb|FQ446415.1|FQ446415
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTC
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTC
EST: gi|110360450|gb|EC923561.1|EC923561
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|349807157|gb|FQ401148.1|FQ401148
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGGTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCCTTGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACC-TTGGG
EST: gi|351016649|gb|FQ424076.1|FQ424076
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110713101|gb|EE088725.1|EE088725
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|349828187|gb|FQ415515.1|FQ415515
EST:     CAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTTCA-TTACAG                         GGAACACAAATACCCTTGGCTGGAAATGTGCC
genomic: CAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTT-CAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACC-TTGGCTGGAAATGTGCC
EST: gi|351028641|gb|FQ446314.1|FQ446314
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGGAACACAAATACCTTGGGCTGGAAATGTGCCCCCAAATGCCAACCTTTG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGG-AACACAAATACCTTGG-CTGGAAATGTGCCTCCAAAGGCCAACCTT-G
EST: gi|71865328|gb|DT014383.1|DT014383
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGGAATGTGCCTCCAAAGGCCA-CCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110707449|gb|EE083861.1|EE083861
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110387439|gb|EC952103.1|EC952103
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110693068|gb|EE068976.1|EE068976
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAAACACAA-TACCTTGGC
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAA-CACAAATACCTTGGC
EST: gi|349827196|gb|FQ421469.1|FQ421469
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACC
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACC
EST: gi|351022959|gb|FQ428868.1|FQ428868
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110419794|gb|EC986044.1|EC986044
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|33404972|gb|CF210599.1|CF210599
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|351024442|gb|FQ426251.1|FQ426251
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATTCCTTGGCTGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGG
EST: gi|110700041|gb|EE077629.1|EE077629
EST:     CAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAAG                         GGAA-ACAAATACCTTGGCTGGAAATGTGCCTCCAAAG-CCAACCTTGGG
genomic: CAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACA-Ggtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGG
EST: gi|349825726|gb|FQ421825.1|FQ421825
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|71875265|gb|DT024320.1|DT024320
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110364158|gb|EC923436.1|EC923436
EST:     GATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
EST: gi|110698753|gb|EE076611.1|EE076611
EST:     GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAG                         GGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG
genomic: GCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGgtactgcaat ... aatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatttgtcatataaatgtactaagtatgctattccttctataaaatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCAT
          atataaatgtactaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgcaattaatcaggacaaatatgattcatgtaaaatagaagtaccactgaatttcatgatgagttcaatacaaatttgtcatataaatgtactaagtatgctattccttctataaaatgaatcagGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA