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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattatcaaggatcaaagataatgatgaacatgaagttcaaaactttcaccaacatatttggtctttgcactaagataaatatttgaaactgcattggcagGCCAAGAAGGGAGAACCAGAGAACACGCCTGATGAAATTCTATCAATGGTGAAGTCTCTGGCTAGTCCTCCACATCGCATTCTTCTGTTCCTTCAACAAA

Basic information

species Vitis vinifera
transcript Vv19s0014g02500.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G36650.1 (Glycine max), 3'ss of exon 2
gtacattatcaaggatcaaagataatgatgaacatgaagttcaaaactttcaccaacatat-ttggtctttgcactaagataaatatttgaaactgcattggcagGCCAAGAAGGGAGAACCAGAGAACACGCCTGATGAAATTCTATCAATGGTGAAGTCTCTGGCTAGTCCTCCACATCGCATTCTTCTGTTCCTTCAACAAA
        | |  | |   |  | ||||  |     ||||       |  ||        |  |||  | |   |   || |   |||||  ||||||      ||| |||||||| |||||||| |||||||| |||||||| || || |||||||||||  ||||||||||||| || ||||| ||| |||||||||| ||||
-------gtgagagtttgtaatttatgacaagtgataagtgttggtttggcatttgtgcttgctggattgtattcatggaaactcatttggtactgca------gGCAAAGAAGGGTGAACCAGAAAACACGCCGGATGAAATCCTTTCTATGGTGAAGTCCTTGGCTAGTCCTCCTCACCGCATACTTTTGTTCCTTCAGCAAA

upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G23480.1 (Glycine max), 3'ss of exon 2
gtacattatcaaggatcaaagataatgatgaacatgaagttcaaaactttcaccaacatatttggtctttgcactaagataaatatttgaaactgcattggcagGCCAAGAAGGGAGAACCAGAGAACACGCCTGATGAAATTCTATCAATGGTGAAGTCTCTGGCTAGTCCTCCACATCGCATTCTTCTGTTCCTTCAACAAA
        | |  | |  ||  | ||||  |   | | |||    | ||   |   |     |||  | |   |   || |  ||||||  ||||||      ||| |||||||| |||||||| ||||||||||||||||| || || |||||||||||  ||||||||||||| || ||||| ||  ||||||| || ||||
-------gtgagagcttgaaatttatgacaa---ttaggtttggcatttatgcttgc-----tggattgtattcatggaaacttatttggtactgca------gGCAAAGAAGGGTGAACCAGATAACACGCCTGATGAAATCCTTTCTATGGTGAAGTCCTTGGCTAGTCCTCCTCACCGCATACTCTTGTTCCTCCAGCAAA

upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G53140.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacattatcaaggatcaaagataatgatgaacatgaagttcaaaactttcaccaacatatttggtct-ttgcactaagataaatatttgaaactgcattggcagGCCAAGAAGGGAGAACCAGAGAACACGCCTGATGAAATTCTATCAATGGTGAAGTCTCTGGCTAGTCCTCCACATCGCATTCTTCTGTTCCTTCAACAAA
                      || |             ||     |  ||     || | || |||  |||||        |||  |||    ||  |  |||||| ||||| ||||| || || |  || |||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||  |||||||||| || |
---------------------gtagtagctttttctcgttttttgtcaatctgtgtcaaagtttgtcaattgcatagtttctaattcttg----tgtgtgagcagGCTAAGAAAGGAGAGCCTGAAACTACACCTGATGAAATTCTGTCAATGGTTAAGTCACTGGCTAGTCCTCCACATCGTATTCTCTTGTTCCTTCAGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaccaacatatttggtctttgcactaagataaatatttgaaactgcattggcagGCCAAGAAGGGAGAACCAGAGAACACGCCTGATGAAATTCTATCAATGGTGAAGTCTCTGGCTAGTCCTCCACATCGCATTCTTCTGTTCCTTCAACAAA
                         taagataaatatttga  TA-rich tract