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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattggaattctttcttttattcacaggctatcccctatttgttgagtgaattattttttatcacgttcttgacctaagtctgttttcaagtgcagTTAACTGATTTTAAGAAGTTATTTGAGGATGAGGTTGCAAAGCTCAAGGCCAGTTCCTCTTTTGCTCCACAAAGCCATCCATTATTACGTCAATTCAGGG

Basic information

species Vitis vinifera
transcript Vv19s0014g02100.t01
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgagtgaattattttttatcacgttcttgacctaagtctgttttcaagtgcagTTAACTGATTTTAAGAAGTTATTTGAGGATGAGGTTGCAAAGCTCAAGGCCAGTTCCTCTTTTGCTCCACAAAGCCATCCATTATTACGTCAATTCAGGG
                          tcttgac  putative branch site (score: 3)
                                      tctgttttc  putative PPT
      tgaattattttttatc  TA-rich tract