Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattcatttcttttcaaatcaggatattgattttttttttcttttttggtattcctaaatactaaatttgtctattacttcatgcaatttgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGATTGGGTTTGGCTTTAAATTTTTCTGTCTTCTATTATGAGATTATGAATT

Basic information

species Vitis vinifera
transcript Vv19s0014g01420.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 3
----aaattcatttcttttcaaatcaggatattgattttttttttcttttttggtattcctaaatactaaatttgtct-attacttcatgcaatttgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGATTGGGTTTGGCTTTAAATTTTTCTGTCTTCTATTATGAGATTATGAATT
     |  | |  || |  |  ||  |||| | | | |||  |  |     |  | ||||        | |||| ||| |  | |||||  |     | |||||| ||||||| ||||||||||||   || ||| | ||||| ||||||||||| |||||  ||||||| || || |||||||| |||||||| ||| |||| |
catttagatgaagtcatcactgatatggatttggctgtttcatcaccgaagtatttttccacctgttcatatttatctgaacaattcataaa-----tattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868950|gb|DT018005.1|DT018005
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71867720|gb|DT016775.1|DT016775
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71877337|gb|DT026392.1|DT026392
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|77586927|gb|DV222610.1|DV222610
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71881137|gb|DT030192.1|DT030192
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|77580649|gb|DV219228.1|DV219228
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGTAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|33401507|gb|CF207134.1|CF207134
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71859540|gb|DT008595.1|DT008595
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|161716244|gb|FC066507.1|FC066507
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110364728|gb|EC928194.1|EC928194
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71876369|gb|DT025424.1|DT025424
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|30251891|gb|CB969624.1|CB969624
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71860008|gb|DT009063.1|DT009063
EST:     CTGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTA
EST: gi|161713475|gb|FC064040.1|FC064040
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|161716569|gb|FC066230.1|FC066230
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|161719421|gb|FC067668.1|FC067668
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|30126672|gb|CB912011.1|CB912011
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|77580824|gb|DV219328.1|DV219328
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|33403459|gb|CF209086.1|CF209086
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110690696|gb|EE068079.1|EE068079
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110684625|gb|EE062116.1|EE062116
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|30251888|gb|CB969621.1|CB969621
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110688139|gb|EE066347.1|EE066347
EST:     CTGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110700468|gb|EE078544.1|EE078544
EST:     CTGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71868345|gb|DT017400.1|DT017400
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110720850|gb|EE097135.1|EE097135
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110703927|gb|EE081301.1|EE081301
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110700161|gb|EE077885.1|EE077885
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71871805|gb|DT020860.1|DT020860
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71860720|gb|DT009775.1|DT009775
EST:     CTGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCC
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCC
EST: gi|161712034|gb|FC060050.1|FC060050
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71861304|gb|DT010359.1|DT010359
EST:     CTGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTG
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTG
EST: gi|110702703|gb|EE078916.1|EE078916
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|33404615|gb|CF210242.1|CF210242
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110716473|gb|EE091484.1|EE091484
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|161713958|gb|FC063143.1|FC063143
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71864504|gb|DT013559.1|DT013559
EST:     CTGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|161717772|gb|FC068161.1|FC068161
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|33404411|gb|CF210038.1|CF210038
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110698951|gb|EE077033.1|EE077033
EST:     CTGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|30251910|gb|CB969643.1|CB969643
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110359344|gb|EC920679.1|EC920679
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71874184|gb|DT023239.1|DT023239
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|71872622|gb|DT021677.1|DT021677
EST:     CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
EST: gi|110688709|gb|EE067573.1|EE067573
EST:     CTGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG                         ACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA
genomic: CCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAGgtatatatgc ... tgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtattcctaaatactaaatttgtctattacttcatgcaatttgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGATTGGGTTTGGCTTTAAATTTTTCTGTCTTCTATTATGAGATTATGAATT
               tactaaa  putative branch site (score: 1)
                                           tttgtttt  putative PPT
           taaatactaaatttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaattcatttcttttcaaatcaggatattgattttttttttcttttttggtattcctaaatactaaatttgtctattacttcatgcaatttgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGATTGGGTTTGGCTTTAAATTTTTCTGTCTTCTATTATGAGATTATGAATT

- - - - - - - -caaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca