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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA

Basic information

species Vitis vinifera
transcript Vv19s0014g01020.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os09g17840.1 (Oryza sativa), 3'ss of exon 2
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                                       |  ||| ||   | ||  |  |    || |||   ||||  ||      | | |    || |     |    ||| |   |   |||||| || |||||||||||||| ||||||||||| || || || || || ||||| ||||||||||||||                               
---------------------------------------------------------------------------------------gtaagcatcc--taaacttctttctcttgctgatgtgacattttgtcgcaatttagCTTATTATTGGTGAACTTGCT-GTTGCACAGTGAGAATATCATCTGGAAGGCGTTTAGCCCCACAACCATCAACAGTGGGCGTGGTGCTGAATTTGAAGGA------------------------------

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 3'ss of exon 2
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                                   |||| |     | |  | |   |    || || |||   ||||  ||   |  | | |    || |     |    ||| |   |   |||||| || |||||||||||||| ||||||||||| || || || || || ||||| ||||||||||||||                               
--------------------------------------------------------------------------------gtaagcatcttaaatttctttatcttacattc-ttactgatgtgacattttgttacaatttagCTTATTATTGGTGAACTTGCT-GTTGCACAGTGAGAATATCATCTGGAAGGCGTTTAGCCCCACAACCATCAACAGTGGGCGTGGTGCTGAATTTGAAGGA------------------------------

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 3'ss of exon 3
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                                       |  |||   |  ||||  | ||     |     ||||||  ||     |    |  | |  ||  |||  || |         | ||||| || |||||||||||||| ||||||||||| ||||| || || || ||||| ||||| || || || || || |||||  | ||||||||| | || 
---------------------------------------------------------------------------------------gtgagcacat--tgaactttgttcttctctattgttgacattttctattcaacttgacttatggaaatctttct-------ctgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACTATCAACAGTGGCCGTGGTGCTGAGTTCGAGGGGGCTGTCATTGCATTGTTCCATCTGTTGATT

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccag-cgtctggtgaatgtggtctcatttctgggttgaccattaactctact--gtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                          | |  || | | |   |  | | |  |  |||| |         ||   | |   |    || |||  |||  ||| | |  | || ||| ||      | ||||| || |||||||||||||| ||||||||||| || || || || |||||||| |||||||| ||||| || || ||||| || ||||||||| | || 
-------------------------------------------------------------------------gtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataa-gactgctttcat------gtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G073498_T02 (Zea mays), 3'ss of exon 2
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                                       |  ||| |||  || |  |  ||   ||  ||   ||    |    |  |||   |  |  | | ||   || |  |  ||  | || || || |||||||||||||| ||||||||||| || || || || |||||||| |||||||||||||| || || ||||| || || |||||| | || 
---------------------------------------------------------------------------------------gtaagcatct--tggacttaatccttttattgatgtgctgttctgttgcacttaaagcttataataagaattct--ttcat--gtagCGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGTGCTGAATTTGAAGGGGCTGTCATTGCACTGTTTCATCTGTTGATT

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G307252_T02 (Zea mays), 3'ss of exon 2
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagcttta-ctatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                ||  | |  |||| | |   | ||  |||   ||           |||||||    | ||  | |||  || ||    |   |   |  ||    |    || ||  | ||||| || |||||||||||||| |||||||| || || || || || || ||||| |||||||||||||| || || |||||  | ||||||||  | || 
----------------------------------------------------------------tgtggcacatttagccacaaaccaaacaggccctaaatgccaca-tctcatt----gattagctatt--ctgtatgtgcggcttacggtaa--actcatgtccat--gtagTGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCGTGGTGCTGAATTTGAAGGGGCAGTCATTGCATTGTTCCATCTATTGATT

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S323_56V6.1 (Physcomitrella patens), 3'ss of exon 3
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaat-gtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                       ||   ||  ||  | | |   |    | || || || |  |   ||||||  |     |||  ||   |  ||| |          | |||  ||     ||||||| |||||||| ||||| |  || || || ||||| || || || ||||||||||| || ||||| || || ||||||||||||||||| || ||  | 
-----------------------------------------------------------------------gcacaacc-tcctgtaactgtctgaagatgcattgttgattttcttctggagtatttcttacgtcggttaacaagttcctttctccggttttgtc---ctgcagTGAGAACATCATTTGGAAAGGATTCAGTCCGACCACCATCAACAGTGGTCGTGGAGCAGAGTTTGAGGGAGCTGTTATTGCTCTCTTCCACCTTCTGTTC

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S114_48V6.1 (Physcomitrella patens), 3'ss of exon 3
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaat-tgttttgatcaattg---gcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                             |     ||||   | | | |  |  | ||   |  | | ||||       ||| |||       |  ||   |  ||| || |    |  |||    ||||||||||||||||||||||||| |||||||| || ||||| || || |||||||||||||| || || || || ||||||||||||||||| || ||  | 
-----------------------------------------------------------------------------cagcgcagcaatta-cattttatttaggtacacgtagtcctggtcctctgatttacttagtgaactgatcaagggaatctgctaatgttgatttctcgcagTGAAAACATCATCTGGAAGGCATTTAGCCCAACTACTATCAACAGTGGTCGTGGAGCTGAGTTCGAGGGCGCTGTTATTGCTCTCTTCCACCTTCTTTTC

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ15673 (Selaginella moellendorffii), 3'ss of exon 2
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaat-tggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                                                                                                     || |   | | ||   |    | || |    |||  |||  | |  | | | || |||||| | ||||||||||||||| ||||| || || || || || || || ||||||||||| ||||| || ||  | |||||||||||||| ||  | || 
--------------------------------------------------------------------------------------------------------------------gtgagagaaacctt---ttccttttccagctctgattatttctattgtgactgtgacagTGAGACCATCATCTGGAAGGCGTTTAGTCCGACTACCATCAACAGTGGCCGTGGAGCTGAGTTTGAGGGAGCTATCATTGCTCTCTTCCACCTCTTGATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033025|gb|FQ461914.1|FQ461914
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAGTATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351055154|gb|FQ440493.1|FQ440493
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAGTATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|110688222|gb|EE066526.1|EE066526
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCTACCACTATTAATAGTGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|77582547|gb|DV220253.1|DV220253
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|352794208|gb|FQ479450.1|FQ479450
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAGTATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|161718407|gb|FC066312.1|FC066312
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAGAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|71890402|gb|DT039457.1|DT039457
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351035297|gb|FQ459564.1|FQ459564
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351024773|gb|FQ430598.1|FQ430598
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|110690618|gb|EE067885.1|EE067885
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351047396|gb|FQ451908.1|FQ451908
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|161713522|gb|FC064063.1|FC064063
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351027632|gb|FQ446796.1|FQ446796
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|349829390|gb|FQ419922.1|FQ419922
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|156738579|gb|EV242700.1|EV242700
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|110698206|gb|EE075492.1|EE075492
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|110729814|gb|EE106178.1|EE106178
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351028323|gb|FQ427219.1|FQ427219
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351019056|gb|FQ426555.1|FQ426555
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCGTAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351057111|gb|FQ450818.1|FQ450818
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|161707716|gb|FC057430.1|FC057430
EST:     GGATATGGGCTTGGCTCTGGAATCTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|110692118|gb|EE070996.1|EE070996
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGGAAG-CTTTTAGCCCCACCACTATTAA
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGG-AAGGCTTTTAGCCCCACCACTATTAA
EST: gi|351053628|gb|FQ440137.1|FQ440137
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAGTATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351015992|gb|FQ431947.1|FQ431947
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|110687041|gb|EE064103.1|EE064103
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCTACCACTATTAATAGTGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|161714004|gb|FC063189.1|FC063189
EST:     TAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: TAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351017096|gb|FQ424523.1|FQ424523
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|110409186|gb|EC974845.1|EC974845
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|352791461|gb|FQ481040.1|FQ481040
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|110365093|gb|EC928838.1|EC928838
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGGAAG-CTTTTAGCCCCACCACTATTAATAGCGGTC
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGG-AAGGCTTTTAGCCCCACCACTATTAATAGCGGTC
EST: gi|110698349|gb|EE075761.1|EE075761
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|33403746|gb|CF209373.1|CF209373
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATCAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351055337|gb|FQ441935.1|FQ441935
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAGTATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|71889203|gb|DT038258.1|DT038258
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|161720666|gb|FC070610.1|FC070610
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|351025109|gb|FQ433526.1|FQ433526
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|71868913|gb|DT017968.1|DT017968
EST:     GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
EST: gi|352789802|gb|FQ478617.1|FQ478617
EST:     GGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTG                         TGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG
genomic: GGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatct ... caattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA
                                 aattgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG