1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaattcctttcagctattcctgcttggatgactgcatcaccatgctaaataaaatgaaacataagtacaaaatttactcctttattttcgacatttgcagATCTCCCATATTCTGGATTGCCTTCAGGCAATGAGGTCCATAATTATTTAGTTCAAGGTGATGATCTTGGTGGCCCCCGATCTGTAAAGGACTCAAAGAC
species | Vitis vinifera |
transcript | Vv18s0166g00240.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGAGTAGGCAATACTTTGGCGTGCCCAAGCGGCCTCGATCAGACTATG ATCTCCCATATTCTGGATTGCCTTCAGGCAATGAGGTCCATAATTATTTAG
genomic: CTGGAGTAGGCAATACTTTGGCGTGCCCAAGCGGCCTCGATCAGACTATGgtttcccctc ... acatttgcagATCTCCCATATTCTGGATTGCCTTCAGGCAATGAGGTCCATAATTATTTAG
taaataaaatgaaacataagtacaaaatttactcctttattttcgacatttgcagATCTCCCATATTCTGGATTGCCTTCAGGCAATGAGGTCCATAATTATTTAGTTCAAGGTGATGATCTTGGTGGCCCCCGATCTGTAAAGGACTCAAAGAC
tgctaaa putative branch site (score: 2)
ataagtacaaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattcctttcagctattcctgcttggatgactgcatcaccatgctaaataaaatgaaacataagtacaaaatttactcctttattttcgacatttgcagATCTCCCATATTCTGGATTGCCTTCAGGCAATGAGGTCCATAATTATTTAGTTCAAGGTGATGATCTTGGTGGCCCCCGATCTGTAAAGGACTCAAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - ttcagct
- - - - - - - - - cctgctt
- - - - - - - - - - - - - - - -ctgcatc
- - - - - - - - - - - - - - - - - - - -ccatgct
- - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaa