1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atacggtcatcacaagcccctaggctctggaaaacataagtattatgagtttacttactattattattattgatgatgatgatggattttctttgtaaagCATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAAGTGGTGCGGAACCCAATAAATCGGACGCTTTCACCATTAATGGTCAACC
species | Vitis vinifera |
transcript | Vv18s0164g00100.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAAAGTTATCCATTTGCCAAGCCTCATAAAGAATTTCCCATTGTTTTAG CATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAAEST: gi|110707628|gb|EE084245.1|EE084245
genomic: AAAAAGTTATCCATTTGCCAAGCCTCATAAAGAATTTCCCATTGTTTTAGgtaagcatcc ... ctttgtaaagCATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAA
EST: AAAAAGTTATCCATTTGCCAAGCCTCATAAAGAATTTCCCATTGTTTTAG CATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAAEST: gi|110700922|gb|EE077999.1|EE077999
genomic: AAAAAGTTATCCATTTGCCAAGCCTCATAAAGAATTTCCCATTGTTTTAGgtaagcatcc ... ctttgtaaagCATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAA
EST: AAAA-GTTATCCATTTGCCAAGCCTCATAAAGAATTTCCCATTGTTTTAG CATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAA
genomic: AAAAAGTTATCCATTTGCCAAGCCTCATAAAGAATTTCCCATTGTTTTAGgtaagcatcc ... ctttgtaaagCATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAA
tgagtttacttactattattattattgatgatgatgatggattttctttgtaaagCATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAAGTGGTGCGGAACCCAATAAATCGGACGCTTTCACCATTAATGGTCAACC
ttttctttgt CT-rich tract
ttacttactattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacggtcatcacaagcccctaggctctggaaaacataagtattatgagtttacttactattattattattgatgatgatgatggattttctttgtaaagCATCATGGTTCAAGGGGGACGTGATGGAGATCATTGAAACTGCTCTTGAAAGTGGTGCGGAACCCAATAAATCGGACGCTTTCACCATTAATGGTCAACC
- - - - - cacaagc
- - - - - - - - - - - - - - ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgga