Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatctcaatttttttttcctatttaaaaatcttacaaattgtttttagattattatctactttatttactttattattttaacgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG

Basic information

species Vitis vinifera
transcript Vv18s0122g01190.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135931|gb|CB921269.1|CB921269
EST:     AAGGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|351049301|gb|FQ429044.1|FQ429044
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37189590|gb|CF608939.1|CF608939
EST:     AAGGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCNATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71872246|gb|DT021301.1|DT021301
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71866454|gb|DT015509.1|DT015509
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71870392|gb|DT019447.1|DT019447
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|18458654|gb|BM436932.1|BM436932
EST:     AAGGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71871903|gb|DT020958.1|DT020958
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|110422203|gb|EC988518.1|EC988518
EST:     AAGGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTTTTTGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|349812463|gb|FQ407082.1|FQ407082
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|77587638|gb|DV222996.1|DV222996
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|349812462|gb|FQ407081.1|FQ407081
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|349808030|gb|FQ402421.1|FQ402421
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71870289|gb|DT019344.1|DT019344
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71875149|gb|DT024204.1|DT024204
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71869195|gb|DT018250.1|DT018250
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71872390|gb|DT021445.1|DT021445
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|30321835|gb|CD005097.1|CD005097
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|110378901|gb|EC944058.1|EC944058
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|30136340|gb|CB921678.1|CB921678
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|29781814|gb|CB346592.2|CB346592
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGATTAGGATGCAGTACAAGGAGAAGCACCC
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCC
EST: gi|34544994|gb|CF513226.1|CF513226
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71870838|gb|DT019893.1|DT019893
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37188038|gb|CF607389.1|CF607389
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|110701263|gb|EE078641.1|EE078641
EST:     TAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|110359145|gb|EC920159.1|EC920159
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71877377|gb|DT026432.1|DT026432
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37187271|gb|CF606624.1|CF606624
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|110727673|gb|EE104704.1|EE104704
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|27586818|gb|CB009513.1|CB009513
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71871069|gb|DT020124.1|DT020124
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|30125574|gb|CB910913.1|CB910913
EST:     AAGGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37188411|gb|CF607760.1|CF607760
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71872295|gb|DT021350.1|DT021350
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71877289|gb|DT026344.1|DT026344
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37190659|gb|CF610008.1|CF610008
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|77584467|gb|DV221302.1|DV221302
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71867293|gb|DT016348.1|DT016348
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|26266952|gb|CA818015.1|CA818015
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71879402|gb|DT028457.1|DT028457
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|34545986|gb|CF514218.1|CF514218
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|349812002|gb|FQ410799.1|FQ410799
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37189938|gb|CF609287.1|CF609287
EST:     AAGGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|30135991|gb|CB921329.1|CB921329
EST:     AAGGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71873912|gb|DT022967.1|DT022967
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|110688346|gb|EE066794.1|EE066794
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|349822310|gb|FQ412574.1|FQ412574
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37188583|gb|CF607932.1|CF607932
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|71869029|gb|DT018084.1|DT018084
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|110725319|gb|EE101688.1|EE101688
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|77579649|gb|DV218677.1|DV218677
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37187855|gb|CF607208.1|CF607208
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|30125704|gb|CB911043.1|CB911043
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
EST: gi|37189435|gb|CF608784.1|CF608784
EST:     AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCAT                         GGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT
genomic: AAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATgtaaaatctc ... acgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgtttttagattattatctactttatttactttattattttaacgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG
                                        ttttaac  putative branch site (score: 2)
     tttttagattattatc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaatctcaatttttttttcctatttaaaaatcttacaaattgtttttagattattatctactttatttactttattattttaacgattgaagGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
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