Sequence
atgc intronic sequence ATGC exonic sequence...ctgcagcctcctagtttttggtagactagtttctaattatttactctcttttttttctcttgggttttctatgatttttgtagaggtgcttcttatgcagGGCCCTTGCACTTGCACCTATTGTAGATAGAGGATTGTCATGGTTTACAGTAAAATTCAGGTTTGAATCTCAGGGAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0122g01180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G38695.1 (Arabidopsis thaliana), 3'ss of exon 7
-ctgcagcctc-ctagtttttggtagactagtttctaattatttactctcttttttttctcttgggttttctatgatttttgtagaggtgcttcttatgcagGGCCCTTGCACTTGCACCTATTGTAGATAGAGGATTGTCATGGTTTACAGTAAAATTCAGGTTTGAATCTCAGGGAAAG
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aggacagtcgcacttgcacttgcatttgtagttt-tgattgttattgccgaccttatcttgttgtgatgt-tgttacccatgaagaatgttgatggatgcagGGCAGTCGCACTTGCACCTATTGTTGATAGAGGATTGTCGTGGTTTACAGTAAAATGCAACTTTGAAAGTCAGGGAAAA
upper sequence: Vv18s0122g01180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G38695.2 (Arabidopsis thaliana), 3'ss of exon 9
ctgcagcctcctagtttttggtagactagtttctaattatttactctcttttttttctcttgggttttctatgatttttgtagaggtgcttcttatgcagGGCCCTTGCACTTGCACCTATTGTAGATAGAGGATTGTCATGGTTTACAGTAAAATTCAGGTTTGAATCTCAGGGAAAG
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--------------------gtagttttgattgttattgccgaccttatcttgttgtgatgttgttacccatgaagaatgttgatgg-------atgcagGGCAGTCGCACTTGCACCTATTGTTGATAGAGGATTGTCGTGGTTTACAGTAA-------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcttttttttctcttgggttttctatgatttttgtagaggtgcttcttatgcagGGCCCTTGCACTTGCACCTATTGTAGATAGAGGATTGTCATGGTTTACAGTAAAATTCAGGTTTGAATCTCAGGGAAAG
tgcttctt CT-rich tract
ttttctatgattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgcagcctcctagtttttggtagactagtttctaattatttactctcttttttttctcttgggttttctatgatttttgtagaggtgcttcttatgcagGGCCCTTGCACTTGCACCTATTGTAGATAGAGGATTGTCATGGTTTACAGTAAAATTCAGGTTTGAATCTCAGGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - cctccta