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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttcatatgcgatattgccccctttctttttttcttttttcttttttcttttttcttcttttttacgaattcaattttggatttttggtattagTTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACAGATGGTGTTCAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTG

Basic information

species Vitis vinifera
transcript Vv18s0122g00680.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351012854|gb|FQ430417.1|FQ430417
EST:     CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG                         TTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
genomic: CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAGgtagtttcat ... ttggtattagTTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
EST: gi|351028617|gb|FQ446290.1|FQ446290
EST:     CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG                         TTTTGGGATTAAAGGACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
genomic: CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAGgtagtttcat ... ttggtattagTTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
EST: gi|349827467|gb|FQ422335.1|FQ422335
EST:     CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG                         TTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
genomic: CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAGgtagtttcat ... ttggtattagTTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
EST: gi|351029607|gb|FQ427447.1|FQ427447
EST:     CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG                         TTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
genomic: CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAGgtagtttcat ... ttggtattagTTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
EST: gi|351014409|gb|FQ437411.1|FQ437411
EST:     CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG                         TTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
genomic: CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAGgtagtttcat ... ttggtattagTTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
EST: gi|349832962|gb|FQ423084.1|FQ423084
EST:     CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAG                         TTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA
genomic: CAACGTGTTGTCTTCTGCAAGAATGAGAACAAGGAAGAAGAAAAAACAAGgtagtttcat ... ttggtattagTTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttttcttttttcttcttttttacgaattcaattttggatttttggtattagTTTTGGGATTAAAGAACAACATGGAGGTGGAAGAAGGGAGGTTGTGCTACAGATGGTGTTCAGTACAATTTCCCTTCAGGCAATTGTTCCTAACGCACTG
                                          ttttt  CT-rich tract
     tttcttttttcttctt  TA-rich tract