Sequence
atgc intronic sequence ATGC exonic sequence...atatcttgagaattggaagaaattaaagtatctgttattttaaatacttggaactatctttttcaaacacaagagcttgtttgatttttgtttgttgcagGTGGGAACAGTTGGAGGTGGGACTCAACTTCCATCTCAATCTGCTTGTCTAAACCTACTGGGCGTAAAGGGTGCAAGCAAAGAGTCACCAGGATCAAACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0122g00610.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G44070.1 (Glycine max), 3'ss of exon 3
atatcttgag--aattggaagaaattaaagtatctgttattttaaatacttgg--aactatctttttcaaacacaagagcttgtttgatttttgtttgt---tgcagGTGGGAACAGTTGGAGGTGGGACTCAACTTCCATCTCAATCTGCTTGTCTAAACCTACTGGGCGTAAAGGGTGCAAGCAAAGAGTCACCAGGATCAAACT
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gtgacttggcccaccccatcttttcttagatattattactcttgtataattggttaattttccaattcaatagctaaggtttatatgattcattattgtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCAAGCAAGGAGTCACCAGGATCAAACT
upper sequence: Vv18s0122g00610.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G05020.1 (Glycine max), 3'ss of exon 3
atatcttgagaattggaagaaattaaagtatc---tgttattttaaatacttgg--aactatctttttcaaacacaagagcttgtttgatttttgtttgt---tgcagGTGGGAACAGTTGGAGGTGGGACTCAACTTCCATCTCAATCTGCTTGTCTAAACCTACTGGGCGTAAAGGGTGCAAGCAAAGAGTCACCAGGATCAAACT
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gtgatttggcacacaatatatattttcttagacaatactcttctataaagttggttaattttccaattcaatagccaaggtttatatgattcattattgtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCTAGCAAGGAGTCACCAGGATCAAACT
upper sequence: Vv18s0122g00610.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G05530.1 (Glycine max), 3'ss of exon 3
atatcttgagaattggaagaaattaaagtatctgt-tattttaaatacttgg--aactatctttttcaaacacaagagcttgtttgat--ttttgtttgttgcagGTGGGAACAGTTGGAGGTGGGACTCAACTTCCATCTCAATCTGCTTGTCTAAACCTACTGGGCGTAAAGGGTGCAAGCAAAGAGTCACCAGGATCAAACT
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ttcttctataaat----acttacagagatgtttatctaaacagagaacttggttaattttctagttcaattgcta-agcttgtgtaacaattgtggttctctcagGTTGGTACAGTGGGGGGTGGAACACAACTACCATCTCAATCTGCTTGCTTGAATCTGCTCGGCGTAAAGGGTGCGAGCAAGGATTCACCGGGATCGAACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttggaactatctttttcaaacacaagagcttgtttgatttttgtttgttgcagGTGGGAACAGTTGGAGGTGGGACTCAACTTCCATCTCAATCTGCTTGTCTAAACCTACTGGGCGTAAAGGGTGCAAGCAAAGAGTCACCAGGATCAAACT
gtttgat putative branch site (score: 5)
tttttgttt CT-rich tract
tttgatttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatcttgagaattggaagaaattaaagtatctgttattttaaatacttggaactatctttttcaaacacaagagcttgtttgatttttgtttgttgcagGTGGGAACAGTTGGAGGTGGGACTCAACTTCCATCTCAATCTGCTTGTCTAAACCTACTGGGCGTAAAGGGTGCAAGCAAAGAGTCACCAGGATCAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - tacttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaag