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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtggttgttctatactatatataccattttaaggattttatttcgcctattaattcagtttcatcatcttccagGAGCCAAGCGCGCAAGATTGGAGAAGGAGAAAGGGGTGATTATCCGGTTTGTGATCGGACACAGCGCGACGCCGGGCGGGGTTCTGGACAGGGCCATAGA

Basic information

species Vitis vinifera
transcript Vv18s0089g01040.t01
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataccattttaaggattttatttcgcctattaattcagtttcatcatcttccagGAGCCAAGCGCGCAAGATTGGAGAAGGAGAAAGGGGTGATTATCCGGTTTGTGATCGGACACAGCGCGACGCCGGGCGGGGTTCTGGACAGGGCCATAGA
                            tattaat  putative branch site (score: 2)
                                       tttcatcatcttcc  putative PPT
      attttaaggattttat  TA-rich tract