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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttattcaatttttgactgcttttacatctcaatctgtcttgagtggtgatctaattggataagctcactagtaggttaccgctgaattttgaaatttttgcagGTTGGGACCACAACTATGAGTAGCACTGCAGCATTAAAAGCTGGTCTGCGTGGAAAAGCTTTGAGAATAACTCATTACTATCGAGATTCACTCTG

Basic information

species Vitis vinifera
transcript Vv18s0089g00360.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g00360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G37040.1 (Glycine max), 3'ss of exon 3
gtatgtttattcaatttttgactgcttttacatctcaatctgtcttgagtggtgatctaattggataagctcactagtaggttaccgctgaatt--ttgaaatttttgcagGTTGGGACCACAACTATGAGTAGCACTGCAGCATTAAAAGCTGGTCTGCGTGGAAAAGCTTTGAGAATAACTCATTACTATCGAGATTCACTCTG----
|     |  || |   |||| ||   || | || |  || ||| |  |      |  |  ||  ||| | |     | | || | | |  ||||  |||    | ||| |||||||||  || || ||||| ||| ||| |||||||||||||||  | |||||||| ||  ||||||||||||||| |||||| ||||  || ||    
gggcactggtt-agcatttgcct---ttaaaatttgtatttgtttctatcatcaaaat--ttccataggtt-----gcatgtcagctcaaaattcattgcttctcttgaagGTTGGGAGTACCACAATGAGCAGCGCTGAAGCATTAAAAGCTGGATTACGTGGAAAGGCACTGAGAATAACTCATTGCTATCGTGATTTGCTTTGGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaattggataagctcactagtaggttaccgctgaattttgaaatttttgcagGTTGGGACCACAACTATGAGTAGCACTGCAGCATTAAAAGCTGGTCTGCGTGGAAAAGCTTTGAGAATAACTCATTACTATCGAGATTCACTCTG
             agctcac  putative branch site (score: 3)
                                              tttttgc  putative PPT
                                  tgaattttgaaatttt  TA-rich tract