Sequence
atgc intronic sequence ATGC exonic sequence...tattttttattttttgccacaagttttcatggcagctgctccttgtgaagtgttccctttatttatttgattaataattcatataatcttgatgttgcagATTTTACTGAAAGGAACTCACAGTGAGGAATTGAAGAGGGTTAAATGTGTTATGCAGTGTGCAGTTGTTATGGCATATCATTTAATTTTAGAGACTTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0086g00710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G36250.1 (Glycine max), 3'ss of exon 4
tattttttattttttgccacaagttttcatggcagctgctccttgtgaagtgttccc-tttatttatttg---attaataattcatataat-cttgatgttgcagATTTTACTGAAAGGAACTCACAGTGAGGAATTGAAGAGGGTTAAATGTGTTATGCAGTGTGCAGTTGTTATGGCATATCATTTAATTTTAGAGACTTCTT
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--atatgaatgtgaaattatag---tttatggcctctcttcctgaaaatgtttttttatctagtgttttggatgttattaacttaagttttacctgcaattgcagATTTTACTGAAAGGTACACACAGTGATGAACTGAAGAGGATCAAATGTGTCATGCGGTGTGCAGTTGTCATGGCATATCATTTAATCCTTGAAACCTCCT
upper sequence: Vv18s0086g00710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G31340.1 (Glycine max), 3'ss of exon 3
tattttttattttttgccacaagttttcatggcagctgctccttgtgaagtgttccctttattta-----tttgat--taataa-ttcatataatcttgatgttgcagATTTTACTGAAAGGAACTCACAGTGAGGAATTGAAGAGGGTTAAATGTGTTATGCAGTGTGCAGTTGTTATGGCATATCATTTAATTTTAGAGACTTCTT
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--------atatgaaagtgaaattatagtttatggcctttcatcctgaaaatgtttttttatctagagtttttgatgttgttaactttggctttacctgcaattgcagATTTTACTGAAAGGTACACACAGTGATGAACTGAAGAGGATCAAATGTGTCATACGGTGTGCAGTTGTCATGGCATATCACTTGATCCTTGAAACCTCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaagtgttccctttatttatttgattaataattcatataatcttgatgttgcagATTTTACTGAAAGGAACTCACAGTGAGGAATTGAAGAGGGTTAAATGTGTTATGCAGTGTGCAGTTGTTATGGCATATCATTTAATTTTAGAGACTTCTT
tttatttatttgatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattttttattttttgccacaagttttcatggcagctgctccttgtgaagtgttccctttatttatttgattaataattcatataatcttgatgttgcagATTTTACTGAAAGGAACTCACAGTGAGGAATTGAAGAGGGTTAAATGTGTTATGCAGTGTGCAGTTGTTATGGCATATCATTTAATTTTAGAGACTTCTT
- - - - - - - -gccacaa
- - - - - - - - - - - - - tcatggc
- - - - - - - - - - - - - - - - - - tgctcct