Sequence
atgc intronic sequence ATGC exonic sequence...gaaaatggaagagtagcatttcttgacctttgtaaaatgattataaggaagtaaatccgtctacatgatggttcatggtctatttctctatggcctacagCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0076g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM5G821024_T01 (Zea mays), 3'ss of exon 3
gaaaatggaagagtagcatttcttgacctttgtaaaatgattataaggaagtaa-atccgtctacatgatggttcatggtctatttctctatggcc-tacagCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCC
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--tactgtagttatcttctgagcagataggtagatattagttggactagcctatcatttatcaagcaatttgttgaaaccctggttgtgtttgatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGGGCAGGTCCCTAACATAAACGGGAATCCCTTCAACGGAGGACTACCCCA
upper sequence: Vv18s0076g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G079365_T01 (Zea mays), 3'ss of exon 3
gaaaatggaagagtagcatttcttgacctttgtaaaatgattataaggaagtaaatccgtcta-catgatggttcatggtctatttctctatggcc-tacagCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCC
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-ctcctaaaaaacagttatcttctgagcag-atatgcagatattagttgaacaagcgtatcaagcacccttgttaataaaccctggttgtgttttgatgcagCTCTAAATGATGCCTTGAGGGAAGAAGTCCAGCGGCTTAAGATAGCCGCAGGGCAGGTCCCCAACATGAACGGGAATCCCTTCAATGGAGGACTATCACA
upper sequence: Vv18s0076g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM5G821024_T02 (Zea mays), 3'ss of exon 3
----------------------------------gaaaatggaagagtagcatttc---ttgacctttgtaaaatgattataaggaagtaa-atccgtctacatgatggttcatggtctatttctctatggcc-tacagCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCC
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gttatctcctgtcctgaccaactttattctcttgaaaaatactgtagttatcttctgagcagataggtagatattagttggactagcctatcatttatcaagcaatttgttgaaaccctggttgtgtttgatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGGGCAGGTCCCTAACATAAACGGGAATCCCTTCAACGGAGGACTACCCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110727015|gb|EE103324.1|EE103324EST: ACTCAAACTACGGTTGCAGGCCATGGAGCAACAGGCATCTCTTAAAGAAG CTCTAAATGAAGCATTGAGAGAAGAAATACAGAGGCCTTAAGATCGCAACT
genomic: ACTCAAACTACGGTTGCAGGCCATGGAGCAACAGGCATCTCTTAGAGAAGgtatgcatgt ... tggcctacagCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGC-TTAAGATCGCAACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggaagtaaatccgtctacatgatggttcatggtctatttctctatggcctacagCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCC
tttctctat CT-rich tract
tctattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaaatggaagagtagcatttcttgacctttgtaaaatgattataaggaagtaaatccgtctacatgatggttcatggtctatttctctatggcctacagCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
gaaaatg
- - - -gaagagta
- - - - - - - -gcatttc
- - - - - - - - - - - - - - - - -aaaatga
- - - - - - - - - - - - - - - - - - - - - - - - aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgg