Sequence
atgc intronic sequence ATGC exonic sequence...gttcattattttcaagagctttgtagttgtcagaaagtacatattaacatgtatgaatcacatgttaacacgtttgatcacatggattttattttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTGAGATGTGCTTTGGCAATGCTAAAACAAGACTCTGAAGGTAAAGAATGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g01040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os11g07440.2 (Oryza sativa), 3'ss of exon 3
---gttcattattttcaagagctttgtagttgtcagaaagtacatattaacatgtatgaatcacatgttaacacgtttgatcacatggattttattttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTGAGATGTGCTTTGGCAATGCTAAAACAAGACTCTGAAGGTAAAGAATGTA
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gaagttctactttttgaactacaattttataattggtgattg-agatccttatcattacatgactgtttggctcaaatgttaaatctactattatttc--cagGGTATATATGGTTATCCTATTGAGATCCAAGCTCTATTCTACATGGCGTTGAGATGTGCTCTGCAGATGCTTAAGCCAGATGGTGAAGGGAAGGATTTCA
upper sequence: Vv18s0072g01040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G007277_T01 (Zea mays), 3'ss of exon 3
gttcatta-ttttcaagagctttgtagttgtcagaaagtacatattaacat-gtatgaatca-catgttaacacgtttgatcacatggattttattttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTGAGATGTGCTTTGGCAATGCTAAAACAAGACTCTGAAGGTAAAGAATGTA
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ccctacaagttctcttattgtttgtcctacttttgaattacatattaatttcaaatgaagcttcttgtcagtgcat--gattgtaattactgcaatt-atcagGGTATATATGGTTATCCCATTGAAATCCAAGCCCTATTCTACATGGCTTTAAGATGTGCTCTCCAAATGCTCAAGCCAGAGGGTGAAGGGAAGGATTTCA
upper sequence: Vv18s0072g01040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G115451_T02 (Zea mays), 3'ss of exon 3
gttcattattttcaagagctttgtagttgtcagaaagtacatattaacatgtatgaatca--catgttaacac-gtttgatcacatggattttattttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTGAGATGTGCTTTGGCAATGCTAAAACAAGACTCTGAAGGTAAAGAATGTA
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acttttgaattacatattgattttaaatg--aagtttccttttttattaattctaaatgaagcttcccaccattgcatgatcgtaatttcttcaatttt-cagGGTATATATGGTTATCCCATTGAGATTCAAGCCCTATTCTATATGGCATTAAGATGTGCTCTCCAAATGCTCAAGCCAGAGGGCGAAGGGAAGGATTTCA
upper sequence: Vv18s0072g01040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G35890.2 (Glycine max), 3'ss of exon 3
gttcattattttcaagagct---ttgtagttgtcagaaagtacatattaacatgtatgaatcacatgttaacacgtttgatcacatggattttattttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTGAGATGTGCTTTGGCAATGCTAAAACAA---GACTCTGAAGGTAAAGAATGTA
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-tttcaagctccctggagttaagctttcattcttatttgactgattttgaagaacttgcatattttattaat-tgtttcgtcctcttccttttttcttg-cagGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGAGATGTGCTTTGTCAATGCTGAAACAGGATGACGCCGAAGGGAAGGAAT---
upper sequence: Vv18s0072g01040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G31730.2 (Glycine max), 3'ss of exon 3
----gttcattattttcaagagctttgtagttgtcagaaagtacatattaacatgtatgaatcacatgttaacacgtttgatcacatggattttattttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTGAGATGTGCTTTGGCAATGCTAAAACAA---GACTCTGAAGGTAAAGAATGTA
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tcatgttccctggagttaag--ctttcatgtatttggctgattttgaagaatttgcatattttattaattgtttcttctgcttccttt--cttttttcttgcagGGCATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGAGATGTGCTTTGTCAATGCTGAAACAGGATGACGCCGAAGGAAAGGAAT---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707801|gb|FC056448.1|FC056448EST: TTCCAACTCTGCTTTGTGCTGACGGATGCTCTATGGTTGACCGAAGAATG GGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTG
genomic: TTCCAACTCTGCTTTGTGCTGATGGATGCTCTATGGTTGACCGAAGAATGgtaagatttc ... attttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTG
EST:
gi|161718716|gb|FC067312.1|FC067312EST: TTCCAACTCTGCTTTGTGCTGACGGATGCTCTATGGTTGACCGAAGAATG GGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTG
genomic: TTCCAACTCTGCTTTGTGCTGATGGATGCTCTATGGTTGACCGAAGAATGgtaagatttc ... attttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacatgtatgaatcacatgttaacacgtttgatcacatggattttattttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTGAGATGTGCTTTGGCAATGCTAAAACAAGACTCTGAAGGTAAAGAATGTA
ttttatttt CT-rich tract
atggattttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcattattttcaagagctttgtagttgtcagaaagtacatattaacatgtatgaatcacatgttaacacgtttgatcacatggattttattttgacagGGTATTTATGGTTATCCAATTGAAATTCAAGCACTTTTCTTCATGGCACTGAGATGTGCTTTGGCAATGCTAAAACAAGACTCTGAAGGTAAAGAATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - gaaagta
- - - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacatg