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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgagacacatgattgaaaacttagttttggtaccaaagatgttccggacttcataaccttttaaatgagtttcaagacttaatttttgaagctgttaggcacttttgactgtgaagtatacaattatgtattgctttccaaatgttattagGTATTTGAAGCTTTGGGGTCATTGAAATTCCCATATGTTTATCCTGACCCTGAAAGCCGTCGATTACGAGGTGCACTTGCAGAAGATTCAGGCATTGAGT

Basic information

species Vitis vinifera
transcript Vv18s0072g00940.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857670|gb|DT006725.1|DT006725
EST:     ATATTGTCAAGCTAGATGCAAATGAAAACCCTTACGGTCCACCCCCAGAG                         GTATTTGAAGCTTTGGGGTCATTGAAATTCCCATATGTTTATCCTGACCCT
genomic: ATATTGTCAAGCTAGATGCAAATGAAAACCCTTACGGTCCACCCCCAGAGgcaagtgaga ... atgttattagGTATTTGAAGCTTTGGGGTCATTGAAATTCCCATATGTTTATCCTGACCCT
EST: gi|37185120|gb|CF604473.1|CF604473
EST:     ATATTGTTAAGCTAGATGCAAATGAAAACCCTTACGGTCCACCCCCAGAG                         GTATTTGAAGCTTTGGGGTCATTGAAATTCCCATATGTTTATCCTGACCCT
genomic: ATATTGTCAAGCTAGATGCAAATGAAAACCCTTACGGTCCACCCCCAGAGgcaagtgaga ... atgttattagGTATTTGAAGCTTTGGGGTCATTGAAATTCCCATATGTTTATCCTGACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcacttttgactgtgaagtatacaattatgtattgctttccaaatgttattagGTATTTGAAGCTTTGGGGTCATTGAAATTCCCATATGTTTATCCTGACCCTGAAAGCCGTCGATTACGAGGTGCACTTGCAGAAGATTCAGGCATTGAGT
      ttttgac  putative branch site (score: 3)
                    tatacaattatgtatt  TA-rich tract