Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgatttaacactcgcattttttattcatcgttccatttctatgttcatataattaatgattcctgttttatgataatagttgtttgcttgttttcaatgaagGATGTCGGGATTTCCTCTGATAAGCACGCCCTTATCATTCCTCCATTCATGGGGCGTGGAAAACGAGTCCATCCTATGCCATTTCCTGATTCTTCTATGT

Basic information

species Vitis vinifera
transcript Vv18s0072g00370.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G08920.1 (Glycine max), 3'ss of exon 3
gtaagttgattt--aacactcgcattttttattcatcgttccatttctatgttcatataattaatgattcctgttttatgataatagttgtttgcttgttttcaatgaagGATGTCGGGATTTCCTCTGATAAGCACGCCCTTATCATTCCTCCATTCATGGGGCGTGGAAAACGAGTCCATCCTATGCCATTTCCTGATTCTTCTATGT
|| |||||||||    ||||||    | ||     |  ||   ||| | | |  || | | || ||| |          ||| || |||         || ||||| |||||||| || |||||  ||||||| || || |||||  |||||||||||| ||   | || |||||||| ||||| ||||| ||||||||||| ||| |  
gttagttgatttcctgcactcgtggctgttgcctttttttttttttttttctgaatttgaata-tgact----------gatgatggtt---------ttgtcaattaagGATGTTGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACGGCCAGAGGGAAACGAGTTCATCCCATGCCTTTTCCTGATTCATCTGTAC

upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G28080.1 (Glycine max), 3'ss of exon 2
gtaagttgattt--aacactcgcattttttattcatcgttccatttctatgttcatataattaatgattcctgttttatgataatagttgtttgcttgttttcaatgaagGATGTCGGGATTTCCTCTGATAAGCACGCCCTTATCATTCCTCCATTCATGGGGCGTGGAAAACGAGTCCATCCTATGCCATTTCCTGATTCTTCTATGT
|| || || |||  | |||| |  | | || ||    ||    |||||   ||   |||  |  |  ||   |   |||  | |  | || | | ||  | ||||| ||||||||||| |||||  ||||||| || || |||||  |||||||||||| ||  || || ||||| ||  |||| ||||| ||||||||||| ||| |  
gttagctgtttttcagcacttgtgtctgttctt----gtcttttttctgaatttgaata--tgctatttttgggcctatt-tgactggtgatggttt--tgtcaattaagGATGTCGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACGGCTCGAGGGAAACGGGTTTATCCCATGCCTTTTCCTGATTCATCTGTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataattaatgattcctgttttatgataatagttgtttgcttgttttcaatgaagGATGTCGGGATTTCCTCTGATAAGCACGCCCTTATCATTCCTCCATTCATGGGGCGTGGAAAACGAGTCCATCCTATGCCATTTCCTGATTCTTCTATGT
   aattaat  putative branch site (score: 3)
                                       cttgttttc  putative PPT
                  ttttatgataatagtt  TA-rich tract