1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagcttatatgatggaatgagtggattttattgagaaataaggtttattttctgtttggttatagctcctctgatttatccatcctattaactttttcagATTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGACACCCCAAATCCGAAGCAATGGCATTGATGTTGCCCAGTTCTCAACTCC
species | Vitis vinifera |
transcript | Vv18s0041g02080.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGGGTTTCAAACACGG ATTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGAEST: gi|33404250|gb|CF209877.1|CF209877
genomic: GGAGGGTTTCAAACACGGgtatgttttt ... actttttcagATTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGA
EST: CGGTATCNNNNNNNGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGG ATTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGA
genomic: CGGTATCTTTTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGGgtatgttttt ... actttttcagATTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGA
tattttctgtttggttatagctcctctgatttatccatcctattaactttttcagATTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGACACCCCAAATCCGAAGCAATGGCATTGATGTTGCCCAGTTCTCAACTCC
tattaac putative branch site (score: 1)
ctttttc CT-rich tract
tattaactttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcttatatgatggaatgagtggattttattgagaaataaggtttattttctgtttggttatagctcctctgatttatccatcctattaactttttcagATTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGACACCCCAAATCCGAAGCAATGGCATTGATGTTGCCCAGTTCTCAACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - -ggaatga
- - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcct