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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttttacttaccatttgccgtagatttgaaaggcattccttagcttacagcatgcaaatgaatattgaagagttcgtgaattgaaataaggtttattttctgtttggttatagctcctctgatttatccatcctattaactttttcagGTTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGACACCCCAAATCGGAGCCAATGGCATTGATGTTGACCAGTTCTCACCTCC

Basic information

species Vitis vinifera
transcript Vv18s0041g02060.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716760|gb|FC065583.1|FC065583
EST:     CGGTATCNNNNNNNGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGG                         GTTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGA
genomic: CGGTATCTTTTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGGgtatgttttt ... actttttcagGTTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttctgtttggttatagctcctctgatttatccatcctattaactttttcagGTTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGACACCCCAAATCGGAGCCAATGGCATTGATGTTGACCAGTTCTCACCTCC
                                        tattaac  putative branch site (score: 1)
                                              ctttttc  CT-rich tract
                                        tattaactttttca  TA-rich tract