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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaataagtgtcacttacatgctctttgttcaacaatagcatgcaatttaatttgctctttttacttttgtctttgtttttgacaatttgaattacatgacagGTGGCCTCAAACTTAAAG

Basic information

species Vitis vinifera
transcript Vv18s0041g01360.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699715|gb|EE076966.1|EE076966
EST:     CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGG                         GTGGCCTCAAACTTAAAG
genomic: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGGgtgagaataa ... tacatgacagGTGGCCTCAAACTTAAAG
EST: gi|161714077|gb|FC064378.1|FC064378
EST:     CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGG                         GTGGCCTCAAACTTAAAG
genomic: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGGgtgagaataa ... tacatgacagGTGGCCTCAAACTTAAAG
EST: gi|37188434|gb|CF607783.1|CF607783
EST:     CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGG                         GTGGCCTCAAACTTAAAGAAATATGCAA
genomic: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGGgtgagaataa ... tacatgacagGTGGCCTCAAACTTAAAGAAATATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttgctctttttacttttgtctttgtttttgacaatttgaattacatgacagGTGGCCTCAAACTTAAAG
                             ttttgac  putative branch site (score: 3)
                                    aatttgaattacat  TA-rich tract