Sequence
atgc intronic sequence ATGC exonic sequence...aatgtgcttttcttttatacatctactttagctatgtgacatttcaaggatcatgcttgttctgaaatatgcataatggaaaacttcaaactcattacagGCAGGAAGAGATGTGGTTGCTTGTCTAAATGAAGCAATGGAAAGGCAGGGACTAGATATGCAGGTGTCAGCCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14230.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G26710.1 (Glycine max), 3'ss of exon 1
---aatgtgcttttcttttatacatctactttagctatgtgacatttcaaggatcatgcttgttctgaaatatgcataatggaaaacttcaaactcatta--cagGCAGGAAGAGATGTGGTTGCTTGTCTAAATGAAGCAATGGAAAGGCAGGGACTAGATATGCAGGTGTCAGCCCTG
|| || ||||||| | | | ||| || | | || | || || ||| | |||| | || ||| ||| | ||| |||||||| ||||||||||| ||||||||||| || |||||||||||||| ||| |||| |||| | || || |||
gatcattaactagagttttatat-tttggtatagttagatagtagc---agaaatata-ttaacatgatactagcatgacctggaaattctaaccctttatgcagGCAGGGAGAGATGTGGTGGCTTGTCTAAACGAGGCAATGGAAAGGCAAGGAATAGACATGCGACTTTCTGCTCTG
upper sequence: Vv18s0001g14230.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G40440.1 (Glycine max), 3'ss of exon 3
aatgtgcttttcttttatacatctactttagctatgtgacatttcaaggat--catgcttgttctgaaat-atgcataatggaaaacttcaaactcatta--cagGCAGGAAGAGATGTGGTTGCTTGTCTAAATGAAGCAATGGAAAGGCAGGGACTAGATATGCAGGTGTCAGCCCTG
|| ||||||| | | || ||| | | | | || || | || | || || | || |||| ||||||| ||| |||||||| |||||||||||||||||||| || || |||||||||||||| ||| | || |||| || || || |||
----aactagagttttatat-tttgctatagttttatagtagcagaaatatattaacctgatactagcatgacttggaagttggaactacaaactctttatgcagGCAGGGAGAGATGTGGTTGCTTGTCTGAACGAGGCAATGGAAAGGCAAGGAATTGACATGCGAGTTTCTGCTCTG
upper sequence: Vv18s0001g14230.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G37720.1 (Glycine max), 3'ss of exon 3
--aatgtgcttttcttttatacatctactttagctatgtgacatttcaaggatcatgcttgttctgaaatatgcataatggaaaacttcaaactcatta--cagGCAGGAAGAGATGTGGTTGCTTGTCTAAATGAAGCAATGGAAAGGCAGGGACTAGATATGCAGGTGTCAGCCCTG-
|| || ||||||| | | | ||| || | | || | || || ||| | |||| | |||| | ||||| ||| |||||||| ||||||||||| |||||||| || || |||||||||||||| ||| |||| |||| || || || |||
atcattaactagagttttatat-tttggtatagttagatagtagc---agaaatata-ttaacatgatactagcatgacttggaactgctaactctttatgcaggCAGGGAGAGATGTGGTGGCTTGTCTGAACGAGGCAATGGAAAGGCAAGGAATAGACATGCGAGTTTCTGCTCTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaggatcatgcttgttctgaaatatgcataatggaaaacttcaaactcattacagGCAGGAAGAGATGTGGTTGCTTGTCTAAATGAAGCAATGGAAAGGCAGGGACTAGATATGCAGGTGTCAGCCCTG
tgaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgtgcttttcttttatacatctactttagctatgtgacatttcaaggatcatgcttgttctgaaatatgcataatggaaaacttcaaactcattacagGCAGGAAGAGATGTGGTTGCTTGTCTAAATGAAGCAATGGAAAGGCAGGGACTAGATATGCAGGTGTCAGCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
aatgtgc
- - - - - - - - - -catctac
- - - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - gatcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaac