Sequence
atgc intronic sequence ATGC exonic sequencegtgagctgctgagactgtttttcctttattggtatttcatttcatgctgctttttcatttacgtacttgcaatctttataacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g13530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G11950.3 (Glycine max), 3'ss of exon 3
gtgagctgctgagactgtttttcctttattggtatttcatttcatgctgctttttcatttacgtacttgcaatctt-tataacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCG
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--------gtaaggttatgaagcttctatata-actttgttgcagaaaacactattattgaactcctctatatcttatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAATACACTGTCGAGAGCTGCACTAAGTTTTGCGCAAGCCCA
upper sequence: Vv18s0001g13530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 3
------------gtgagctgctgagactgtttttcctttattggtatttcatttca--tgctgctttttcatttacgtacttgcaatctttat--aacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCG
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ccccctgtaatagagattttctccatgagtttgatcttagtttaatcttaataccggctcttatcagtattgttattgaattgccatacttgtttaacagGAACAAAGTTATCAGAAGATAGCAGGAAATATGGTGCAGATAATACATGTACCAGTGGTAGTACTTTATCAAGAGCTGCGCTAAATTATGCACGTGCCCG
upper sequence: Vv18s0001g13530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G04210.1 (Glycine max), 3'ss of exon 3
gtgagctgctgagactgttt---ttcctttattggt--atttcatttcatgctgctttttcat--ttacgtacttgcaatctttataacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCG
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gtaagtaatattggtttataaagcttctatataagtttgttgcagaaaatgttattattgaattcttctataccattatcttatttaacagGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGCGGTAATACACTGTCTAGAGCTGCACTAAGTTTTGCGCGAGCCCA
upper sequence: Vv18s0001g13530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G01100.2 (Glycine max), 3'ss of exon 3
-----------gtgag-ctgctgagactgtttttcctttattggtatttcatttcatgctgctttt----tcatttacgtacttgcaatctttataacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCG
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ttctggtatatgtatttccatttccacgagtttgatcttagtttaatcttaataccagctcttttcggtattgttattgaattaccatgttatttaacagGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77585677|gb|DV221928.1|DV221928EST: CCGTGGTGTGGAAGGTTTCATAGTTACTGGGTCCAAGCAAGTTGAAATAG GTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTA
genomic: CCGTGGTGTGGAAGGTTTCATAGTTACTGGGTCCAAGCAAGTTGAAATAGgtgagctgct ... tttataacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTA
EST:
gi|161714010|gb|FC064085.1|FC064085EST: CCGTGGTGTGGAAGGTTTCATAGTTACTGGGTCCAAGCAAGTTGAAATAG GTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTA
genomic: CCGTGGTGTGGAAGGTTTCATAGTTACTGGGTCCAAGCAAGTTGAAATAGgtgagctgct ... tttataacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtatttcatttcatgctgctttttcatttacgtacttgcaatctttataacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCG
tctttat CT-rich tract
tttttcattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagctgctgagactgtttttcctttattggtatttcatttcatgctgctttttcatttacgtacttgcaatctttataacagGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT