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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcctgaaccacttatttcctttttttcctgttcatcgctaaagaaatttgtccccactaagtctttcctgatttcttgtttcatcagTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAG

Basic information

species Vitis vinifera
transcript Vv18s0001g13150.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G37260.1 (Glycine max), 3'ss of exon 3
gtatgttcctgaaccacttatttcctttttttcctgttcatcgctaaagaaatttgtccccactaagtctttcctga-tttcttgtttcatcagTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAG
         |   || | |      || || |  | ||  |  ||   |  |||     | | ||| | |||||  | |||| | |   | ||||||||| ||||||||||||||||| |||||||| ||||| || ||||| || |  | ||||
-------gttagtccccctcccctgttcttattttatttttaacttgtggtatt-acatctaataattgtttcccaaatttcatttgctaccagTTATCCTAAGGATTCAGAGAAAATTATGCTAGCAAGGCAAACTGGCTTAACAAAAAACCAG

upper sequence: Vv18s0001g13150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G07710.1 (Glycine max), 3'ss of exon 3
gtatgttcctgaaccacttatttcctttttttcctgttcatcgctaaagaaatttgtccccactaagtctttcctgatttcttgtttcatcagTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAG
||| |||||       | |      || || |  | ||  |  || | || ||| |  |  |  |    || ||  ||||| | |   | ||||||||| ||||||||||||||||| |||||||| ||||| || ||||| || || | ||||
gtaagttcc-------cctcccctgttcttattttatttttaacttatgatattagatctaataattgtttcccaaatttcatttgctaccagTTATCCTAAGGATTCAGAGAAAATTATGCTAGCAAGGCAAACTGGCTTAACAAGAAACCAG

upper sequence: Vv18s0001g13150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G03200.1 (Glycine max), 3'ss of exon 3
--gtatgttcctgaacca----cttatttcctttttttcctgttcatcgctaaagaaatttgtccccactaagtctttcctgatttcttgttt--catcagTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAG
  | || ||    ||  |    |||    | ||  || | |  || |   |     | ||| |    | ||  ||       ||||  |  ||  || |||||| || |||||||| |||||||| ||||| |||||||| || ||||||||||| | ||||
tggaatattaaaaaaagaaaatcttgacactttgattgcatagtcctttttttcttattttatttaaa-tacctcaacttacatttgataattgacaccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAG

upper sequence: Vv18s0001g13150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G03150.1 (Glycine max), 3'ss of exon 4
gtatgttcctgaaccacttatttcctttttttcctgttcatcgctaaagaa-atttgtccccactaagtctttcctgatttcttgtttcatcagTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAG
||||||  |     |||      | | |  ||  | ||   |  |||| || |||      |   || |      ||||   |     || |||||| || |||||||| |||||||| ||||| |||||||| || ||||||||||| | ||||
gtatgtcac-atgtcaccctcaccttgtacttgtttttttgcaataaataacattaaaatacttcaacttacatttgataattga---caccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcgctaaagaaatttgtccccactaagtctttcctgatttcttgtttcatcagTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAG
                                 tcctgat  putative branch site (score: 3)
                             tctttcctgatttctt  CT-rich tract
      taaagaaattt  TA-rich tract