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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttctttttctcttttctgttggagttataactccttgggtatagggtttattcttttttctaactccttattttcaatttctattagCCTGGGCCAAGGGAATCCCAAATTCAATGCTTTATCAAGAGAGAAAGGGCGACTTCAACTTTCCGATTGTATCTTGGTCTGAGCCCTG

Basic information

species Vitis vinifera
transcript Vv18s0001g12660.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110733127|gb|EE109047.1|EE109047
EST:     AGACTCCCGAGCAATGTGGTTGCCTCACGTTCCCTATTTCATTGAAGCAG                         CCTGGGCCAAGGGAATCCCAAATTCAATGCTTTATCAAGAGAGAAAGGGCC
genomic: AGACTCCCGAGCAATGTGGTTGCCTCACGTTCCCTATTTCATTGAAGCAGgtagttcttt ... tttctattagCCTGGGCCAAGGGAATCCCAAATTCAATGCTTTATCAAGAGAGAAAGGGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgggtatagggtttattcttttttctaactccttattttcaatttctattagCCTGGGCCAAGGGAATCCCAAATTCAATGCTTTATCAAGAGAGAAAGGGCGACTTCAACTTTCCGATTGTATCTTGGTCTGAGCCCTG
                         ttctaac  putative branch site (score: 1)
                                             tttctatt  putative PPT
                                   ttattttcaatttcta  TA-rich tract